BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931405
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19860.1 | Symbols: ATHXK2, HXK2 | hexokinase 2 | chr2:85707... 2425 0.0
> AT2G19860.1 | Symbols: ATHXK2, HXK2 | hexokinase 2 | chr2:8570750-8574000
FORWARD LENGTH=1815
Length=1815
Score = 2425 bits (1313), Expect = 0.0
Identities = 1466/1541 (95%), Gaps = 5/1541 (0%)
Strand=Plus/Plus
Query 14 GAGAGAGATGGGTAAAGTGGCTGTTGCTACGACGGTTGTGTGTTCAGTGGCGGTTTGTGC 73
|||| |||||||||||||||| ||||| |||||||| |||||||| |||||||| |||||
Sbjct 62 GAGAAAGATGGGTAAAGTGGCAGTTGCAACGACGGTAGTGTGTTCGGTGGCGGTATGTGC 121
Query 74 GGCGGCGGCGTTGATAGTACGGCGGCGAATGAAAAGCTCAGGGAAATGGGCAAGAGTGAT 133
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 122 GGCGGCGGCGTTGATAGTACGGAGGAGAATGAAAAGCGCAGGGAAATGGGCAAGAGTGAT 181
Query 134 AGAGATATTGAAAGCGTTTGAAGAAGATTGTGCAACGCCCATCGCGAAATTGAGACAAGT 193
||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 182 AGAGATATTGAAAGCCTTTGAAGAAGATTGTGCAACGCCAATTGCCAAATTGAGACAAGT 241
Query 194 GGCTGATGCTATGACTGTGGAGATGCATGCTGGTCTTGCTTCTGAAGGTGGAAGCAAACT 253
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 242 GGCTGATGCTATGACTGTTGAGATGCATGCTGGTCTTGCTTCTGAAGGTGGCAGCAAGCT 301
Query 254 TAAGATGCTTATTAGCTACGTTGATAATCTTCCTTCTGGGGATGAAACTGGTTTCTTT-T 312
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 302 TAAGATGCTTATTAGCTACGTTGATAATCTTCCTTCTGGGGATGAGACTGGTTT-TTTCT 360
Query 313 ATGCATTGGATCTAGGAGGAACAAACTTCCGTGTAATGCGTGTGCTTCTTGGTGGGAAAC 372
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 361 ATGCGTTGGATCTAGGCGGAACAAACTTCCGTGTTATGCGTGTGCTTCTTGGTGGGAAGC 420
Query 373 AAGACCGTGTTGTTAAACGAGAATTCAAAGAAGAATCAATTCCTCCTCATCTT-ATGACC 431
| ||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||
Sbjct 421 ACGACCGTGTTGTTAAACGAGAATTCAAAGAAGAATCTATTCCTCCTCAT-TTGATGACC 479
Query 432 GGGAAATCACATGAATTATTCGATTTTATCGTTGACGTTCTTGCCAAGTTTGTCGCTACA 491
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 GGGAAGTCACATGAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGCTACA 539
Query 492 GAAGGCGAGGACTTTCATCTCCCACCGGGTAGACAAAGGGAGTTAGGTTTCACTTTCTCA 551
|||||||||||||||||||||||||| ||||||||| |||| ||||||| |||||||||
Sbjct 540 GAAGGCGAGGACTTTCATCTCCCACCTGGTAGACAACGGGAACTAGGTTTTACTTTCTCA 599
Query 552 TTTCCGGTTAAGCAGATATCTTTGTCCGCTGGCACTCTCATCAACTGGACAAAGGGGTTT 611
||||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||| |||
Sbjct 600 TTTCCGGTTAAGCAGCTATCTTTATCCTCTGGCACTCTCATCAACTGGACGAAGGGCTTT 659
Query 612 TCCATTGATGATACAGTTGATAAAGATGTTGTTGGAGAACTTGTTAAAGCTATGGAAAGA 671
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCCATTGACGATACAGTTGATAAAGATGTTGTTGGAGAACTTGTTAAAGCTATGGAAAGA 719
Query 672 GTTGGGCTGGACATGCGTGTTGCAGCGCTTGTTAATGATACTATTGGAACACTCGCGGGT 731
|||||||||||||||| ||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 720 GTTGGGCTGGACATGCTTGTCGCAGCGCTTGTTAATGATACCATTGGAACACTTGCGGGT 779
Query 732 GGTAGATACACTAACCCGGATGTCGTTGTCGCTGTTATTTTGGGCACCGGCACAAATGCA 791
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 780 GGTAGATACACTAACCCGGATGTCGTTGTCGCAGTTATTTTGGGCACCGGCACAAATGCA 839
Query 792 GCATATGTCGAACGTGCACATGCAATTCCCAAATGGCATGGTTTGCTTCCCAAATCAGGA 851
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 GCCTATGTCGAACGTGCACATGCAATTCCCAAATGGCATGGTTTGCTACCCAAATCAGGA 899
Query 852 GAAATGGTGATCAACATGGAGTGGGGAAACTTCAGGTCATCGCATCTTCCATTGACAGAG 911
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 900 GAAATGGTGATCAACATGGAATGGGGAAACTTCAGGTCATCACATCTTCCATTGACAGAG 959
Query 912 TACGACCACTCGCTAGATTTGGATAGTTTGAATCCTGGTGAACAGATTCTTGAGAAAATA 971
||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 960 TACGACCACTCTCTAGATGTCGATAGTTTGAATCCTGGTGAACAGATTCTTGAGAAAATC 1019
Query 972 ATTTCCGGAATGTATCTGGGAGAAATCTTGCGTAGAGTTCTTTTGAAGATGGCTGAAGAA 1031
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1020 ATTTCCGGAATGTATCTGGGAGAAATCTTGCGTAGAGTTCTTCTGAAGATGGCTGAAGAA 1079
Query 1032 GCTGCTTTCTTTGGCGACATCGTGCCACCCAAGCTGAAAATACCATTCATCTTAAGGACC 1091
||||| ||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 1080 GCTGCCTTCTTTGGCGATATCGTCCCACCTAAGCTGAAAATACCATTCATCATAAGGACC 1139
Query 1092 CCGAACATGTCTGCTATGCACAGCGATACTTCCCCGGATTTGAAGGTTGTTGGAAGCAAG 1151
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1140 CCGAACATGTCTGCTATGCACAGTGATACTTCCCCGGATTTGAAGGTTGTAGGAAGCAAG 1199
Query 1152 TTAAAAGACATATTGGAGGTCCCGAATAGTTCTCTGAAGATGAGAAAAGTTGTGATCAGC 1211
|||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 1200 TTAAAAGACATATTGGAGGTCCAGACTAGTTCTCTGAAGATGAGGAAAGTTGTGATCAGC 1259
Query 1212 CTCTGTAACATCATCGCAAGCCGAGGAGCTCGTTTATCTGCTGCAGGGATCTATGGAATT 1271
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 CTATGTAACATCATTGCAAGCCGAGGAGCTCGTTTATCTGCTGCGGGGATCTATGGAATC 1319
Query 1272 CTCAAGAAAATAGGAAGAGACGCAACAAAAGATGGAGAAGCTCAGAAATCTGTAATAGCA 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1320 CTCAAGAAAATAGGAAGAGACGCAACAAAAGATGGAGAAGCTCAGAAATCTGTGATAGCG 1379
Query 1332 ATGGACGGTGGGCTATTCGAGCACTACACTCAGTTCAGTGAGTCGATGAAGAGTTCATTG 1391
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1380 ATGGACGGTGGGCTATTCGAGCATTACACTCAGTTCAGTGAGTCGATGAAGAGTTCATTG 1439
Query 1392 AAAGAGTTGCTTGGAGATGAAGTTTCAGAGAGTGTTGAAGTGATACTATCGAATGATGGT 1451
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1440 AAAGAGTTGCTTGGAGATGAAGTTTCAGAGAGTGTTGAAGTGATACTGTCGAATGATGGT 1499
Query 1452 TCAGGTGTTGGAGCTGCATTACTTGCTGCTTCTCACTCTCAGTATCTCGAACTTGAAGAT 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TCAGGTGTTGGAGCTGCATTACTTGCTGCTTCTCACTCTCAGTATCTCGAACTTGAAGAT 1559
Query 1512 GACTTTGAAACAAGTTAATTTTAAA-GCCttttttttttGT 1551
|||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1560 GACTCTGAAACAAGTTAATTTTAAAAGCCTTTTTTTTGTGT 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5