BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931408
Length=259
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19802.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 254 4e-67
AT2G02498.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 93.5 9e-19
> AT2G19802.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:8538776-8539217
REVERSE LENGTH=442
Length=442
Score = 254 bits (137), Expect = 4e-67
Identities = 208/241 (86%), Gaps = 9/241 (4%)
Strand=Plus/Plus
Query 19 TAAAAATGGTGGTTA-CTCTGTTTCTTCTTGCATTTGGCCTTGCTCAGGCTCGATTTCCA 77
||||||| ||||||| || |||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 71 TAAAAATAGTGGTTACCT-TGTTTCTTCTTGCATTTGGCCTTGCTCATGCTAGATATCCA 129
Query 78 ACTTTCCCAACCGAGCCATTTCCTCCTCCACCAAACCGAAGTGTAAAGACCTCAGTGAAC 137
| |||||||||| |||| | |||||||| ||||| ||| ||| ||||| ||||||||
Sbjct 130 ATTTTCCCAACC---CCATATGCTCCTCCATCAAACGGAATTGTGAAGACATCAGTGAAT 186
Query 138 CAATTCCCAGGCGTAACACCTCCATTTTTCCCTCCAGGACACAAAAAACATCCACCA-GT 196
|||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 187 CAATTCCCAGGCTTTACACCTCCATTTTACCCTCCAGGACACAAAAAACATCCACCAAGT 246
Query 197 TCCCAGG-CATGAAGCTAAGAATGCGAAGATGTCAATGAACTAGTATTTAAACATACATT 255
| || ||| |||||||||||||||||||||||| ||||| |||||| ||||| |||
Sbjct 247 -CT-AGAACATCCAGCTAAGAATGCGAAGATGTCAATAAACTAATATTTATACATATATT 304
Query 256 T 256
|
Sbjct 305 T 305
> AT2G02498.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G02490.1); Has
97 Blast hits to 69 proteins in 24 species: Archae - 0; Bacteria
- 0; Metazoa - 9; Fungi - 10; Plants - 45; Viruses -
0; Other Eukaryotes - 33 (source: NCBI BLink). | chr2:669760-670204
FORWARD LENGTH=445
Length=445
Score = 93.5 bits (50), Expect = 9e-19
Identities = 114/143 (80%), Gaps = 11/143 (8%)
Strand=Plus/Plus
Query 6 AAA-CTCTCT-CAGATAAAAATGGTGGTTA-CTCTGTTTC-TTCTTGCATTTGGCCTTGC 61
||| |||| | || |||| || ||||||| || || || ||||||||||||| |||||
Sbjct 31 AAAGCTCTATCCA-ATAACAACCGTGGTTACCT-TG-CTCTTTCTTGCATTTGGTCTTGC 87
Query 62 TCAGGCTCGATTTCCAACTTTCCCAACCGAGCCATTTCCTCCTCCACCAAACC-GAAGTG 120
| ||| ||| || ||||| ||||||||||||||||||||||||||||||| ||| ||
Sbjct 88 CCTTGCTAGATACCCGACTTTTCCAACCGAGCCATTTCCTCCTCCACCAAACCAGAA-TG 146
Query 121 TA-AAGACCTCAGTGAACCAATT 142
| || | ||||| ||||||||
Sbjct 147 -AGAATATATCAGTAAACCAATT 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11812921015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5