BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931409
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19800.1 | Symbols: MIOX2 | myo-inositol oxygenase 2 | chr2:... 1633 0.0
> AT2G19800.1 | Symbols: MIOX2 | myo-inositol oxygenase 2 | chr2:8530896-8533508
REVERSE LENGTH=1318
Length=1318
Score = 1633 bits (884), Expect = 0.0
Identities = 961/998 (96%), Gaps = 6/998 (1%)
Strand=Plus/Plus
Query 1 CGTATCAAATTCCGAGCAAGATGACTATTCTCGTTGAACATTTCG-TCTCTGATTCAAGA 59
||||||||||||||||||||||||||||||| ||||||||||| | || |||||||||||
Sbjct 135 CGTATCAAATTCCGAGCAAGATGACTATTCTTGTTGAACATTTTGTTC-CTGATTCAAGA 193
Query 60 GTTGATGAAAAGAAAGTTATAGAGGAGAGGGATGATGAATTGGTGTTGGATGGAGGTTTT 119
|| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 194 GTGGATGAAAAGAAAGTGATAGAGGAGAGGGATAATGAATTGGTGTTGGATGGAGGTTTT 253
Query 120 GTGGTTCCAAAATCAAAGGAAACTGATGCATTCGATGCTCCTGATATGAATTTCTTAGGC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 254 GTGGTTCCAAAATCAAAGGAAACTGATGCATTCGATGCTCCTGATATGAATTTCTTGGGC 313
Query 180 CATTCTTTCAGGGATTATGAGAATGGTGAAAGCGAGAGACAACAAGGCGTTGAGGAATTC 239
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 314 CATTCCTTCAGGGATTATGAGAATGGTGAAAGCGAGAGACAACAAGGTGTTGAGGAATTT 373
Query 240 TATAGGATGCAACACATTCACCAGACCTATGACTTTGTGAAGAAGATGAGGAAAGAGTAT 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TACAGGATGCAACACATTCACCAGACCTATGACTTTGTGAAGAAGATGAGGAAAGAGTAT 433
Query 300 GGAAAACTTAACAAGATGGAAATGAGTATATGGGAATGTTGTGAGTTATTGAACAATGTT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GGAAAACTTAACAAGATGGAAATGAGTATATGGGAATGTTGTGAGTTATTGAACAATGTT 493
Query 360 GTCGATGAGAGCGACCCGGATCTTGATGAGCCTCAAATCCAACACCTTCTCCAAACCGCT 419
|| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 494 GTTGATGAAAGCGATCCGGATCTTGATGAGCCTCAAATTCAACACCTTCTCCAAACCGCT 553
Query 420 GAAGCCATTCGCAGGGATTATCCCGACGAAGATTGGCTCCATCTCACTGCCTTAATCCAT 479
||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 554 GAAGCCATTCGAAGGGACTATCCCGACGAAGATTGGCTCCATCTCACTGCCCTAATCCAT 613
Query 480 GATCTTGGCAAGGTTCTCCTTCTGCCAGAATTCGGTGGTCTTCCCCAGTGGGCTGTTGTT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 614 GATCTTGGCAAGGTTCTCCTTCTGCCAGAATTCGGTGGTCTTCCCCAGTGGGCTGTCGTT 673
Query 540 GGCGATACATTTCCAGTTGGATGCACCTTCGACTCAGCCAATATTCACCACAAGTATTTC 599
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 674 GGCGATACATTTCCAGTTGGATGTACCTTCGACTCAGCCAATATTCACCACAAGTATTTC 733
Query 600 AAAGGAAATCC-TGATATCAACAACCCAAAATACAACACAAAAAATGGAGTTTACAGTGA 658
|||||||| || |||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 734 AAAGGAAA-CCATGATATCAACAACCCAAAGTACAACACAAAAAATGGAGTTTACACTGA 792
Query 659 AGGATGTGGATTGGACAATGTTCTCATGTCATGGGGTCATGACGACTACATGTATTTGGT 718
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AGGATGTGGTTTAGACAATGTTCTCATGTCATGGGGTCATGACGACTACATGTATTTGGT 852
Query 719 GGCTAAGGAA-AATGGCACGACTCTTCCTCACGCTGGTCTCTTCATTATTCGATACCATT 777
||||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 853 GGCTAAG-AAGAATGGCACGACCCTTCCTCACGCTGGTCTCTTCATTATTCGATATCATT 911
Query 778 CCTTCTATCCATTGCACAAGGCAGGAGCTTACACGCACTTGATGAACGATGAGGACAGAG 837
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 912 CCTTTTATCCATTGCACAAGGCAGGAGCCTACACACACTTGATGAACGATGAGGACAGAG 971
Query 838 ATGATCTCAAGTGGCTCCATGTCTTCAATAAATATGACCTATACAGTAAGAGCAAAGTTC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 ATGATCTCAAGTGGCTCCATGTCTTCAATAAATATGACCTATACAGTAAGAGCAAAGTTC 1031
Query 898 TTGTAGATGTCGAACAAGTGAAGCCTTACTACATTTCCCTCATCAACAAGTATTTTCCGG 957
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1032 TGGTAGATGTCGAACAAGTGAAGCCTTACTACATTTCACTCATCAACAAGTATTTTCCGG 1091
Query 958 CGAAACTAAAATGGTGAGATAAAGCTAAGAGTCAATTA 995
||||||||||||||||||||||||||| ||||||||||
Sbjct 1092 CGAAACTAAAATGGTGAGATAAAGCTACGAGTCAATTA 1129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48727122590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5