BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931413

Length=809
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G44810.1 | Symbols:  | DNA-binding storekeeper protein-relat...   366    2e-100
  AT3G30110.1 | Symbols:  | pseudogene, hypothetical protein | ch...   141    1e-32 


> AT1G44810.1 | Symbols:  | DNA-binding storekeeper protein-related 
transcriptional regulator | chr1:16923543-16924821 FORWARD 
LENGTH=1279
Length=1279

 Score =  366 bits (198),  Expect = 2e-100
 Identities = 249/274 (91%), Gaps = 2/274 (1%)
 Strand=Plus/Plus

Query  537  TAAGGAAGTGG-GGATTCTCCGAGGAGATTCAGAGTCGTCGAATTGGTTTGACAAGTCTT  595
            ||||||||||| || ||||  |||||||||| ||| |||||||||||||||| ||||| |
Sbjct  717  TAAGGAAGTGGTGG-TTCTTGGAGGAGATTCGGAGACGTCGAATTGGTTTGAGAAGTCGT  775

Query  596  TTTTGGTTCGGGTTGTTGCGAGTCTCGGTGTGGATGAGTGTATTGTGAAGTGGAAATGGA  655
            |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  776  TTTTGGTTCGGGTTGTTGCGAGGCTTGGTGTGGATGAGTGTATTGTGAAGTGGAAATGGA  835

Query  656  GTAAGGTGACGATGGACACTAAGAAGAGGATTGAAGAGAAGATGAAGCTGGTGGAGGGTA  715
            |||||||| | | ||| |||||||||||||||||||||||||||||| ||||||||| ||
Sbjct  836  GTAAGGTGTCTAAGGAGACTAAGAAGAGGATTGAAGAGAAGATGAAGATGGTGGAGGCTA  895

Query  716  AGGAATTTGAGTTGTTGTCGCAGAAGATTGATGTTTTGAAGGAGGTGATTTCGGTGATTG  775
            ||||| |||||||||||||||||||||| ||||||||||||||||||  ||| |||||||
Sbjct  896  AGGAACTTGAGTTGTTGTCGCAGAAGATAGATGTTTTGAAGGAGGTGGCTTCTGTGATTG  955

Query  776  CTGAGACTATCTAAGAAGAAGTAATTAGATTGTT  809
            |||| |||||||||||||||| | || |||||||
Sbjct  956  CTGAAACTATCTAAGAAGAAGGACTTGGATTGTT  989


 Score =  206 bits (111),  Expect = 4e-52
 Identities = 231/287 (80%), Gaps = 16/287 (6%)
 Strand=Plus/Plus

Query  13   AAAATCCCAATGGCCAAGAAACTTTTGAACCCTCTGGAAGATCCACCAACCGCTTCTTCA  72
            ||||| || |||  |||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct  70   AAAATTCCGATGAACAAGAAACTTCTCAACCCTCTTGAAGATCCACCAACCGCTTCTTCA  129

Query  73   AGCGACGACGACGAAGTTGAGATTTCATCTGAAGAAGACG---AAGAACAGATCTCCAAT  129
            ||||| |||| ||| |  ||||||||||| | |||||| |   ||||||| |||||||||
Sbjct  130  AGCGAAGACGTCGACGAAGAGATTTCATCAGGAGAAGATGAAAAAGAACATATCTCCAAT  189

Query  130  TCTTCTTCTAAAGAAGAAGATCCCG--C-CACA-ATTCCCTCCACTAAAACCCTAAAATC  185
            |||||||||   ||||||||   ||  | || | || | ||||||| |||||||||| ||
Sbjct  190  TCTTCTTCTTCTGAAGAAGAAAACGAACTCAAAGAT-CTCTCCACTCAAACCCTAAATTC  248

Query  186  TCCTTCCGCTGCCGCTCCAAGTCCCGATTCTGGTTCTGAGTCGGATTCTGACTCAGAGAA  245
            ||||||| | |  ||||||| || ||||||||| |||||| |  |||| |||||||| ||
Sbjct  249  TCCTTCCACCGAGGCTCCAACTCTCGATTCTGGATCTGAGACAAATTCCGACTCAGATAA  308

Query  246  GCCACA-CGTCTTCACCA---AGAAGAA-A--GAAGCTACTGATTCA  285
            |||| | |||||| ||||   ||||||| |  |||| ||||||||||
Sbjct  309  GCCA-ATCGTCTTAACCAGTCAGAAGAAGAAAGAAGGTACTGATTCA  354


 Score =  154 bits (83),  Expect = 1e-36
 Identities = 109/121 (90%), Gaps = 4/121 (3%)
 Strand=Plus/Plus

Query  315  CCAATTCGGTGACAAGATTAGAGGTTTAAAGAACAAGTATTTTGGT-TCAAGGAAGAAGA  373
            ||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct  591  CCAATTCGGTGACAAGATTAGAGGTTTAAAGAAGAAGTATTTTGGTGT-AAGGAAGAAGA  649

Query  374  AAAGTGTT-GAATCGGATCATGATAACAAGTGTTTGGAATTGGCCAAGTCTATTTGGGGA  432
            || || || || | |||||||||||| || ||||||| |||||| |||||||||||||||
Sbjct  650  AAGGT-TTAGACTTGGATCATGATAAGAAATGTTTGGGATTGGCTAAGTCTATTTGGGGA  708

Query  433  C  433
            |
Sbjct  709  C  709


> AT3G30110.1 | Symbols:  | pseudogene, hypothetical protein | 
chr3:11746725-11748496 REVERSE LENGTH=1772
Length=1772

 Score =  141 bits (76),  Expect = 1e-32
 Identities = 89/95 (94%), Gaps = 1/95 (1%)
 Strand=Plus/Plus

Query  569   AGTCGTCGAATTGGTTTGACAAGTCTTTTTTGGTTCGGGTTGTTGCGAGTCTCGGTGTGG  628
             ||| || |||||||||||| ||||| ||||| |||||||||||||||||||||| |||||
Sbjct  1347  AGTAGT-GAATTGGTTTGAGAAGTCGTTTTTAGTTCGGGTTGTTGCGAGTCTCGATGTGG  1405

Query  629   ATGAGTGTATTGTGAAGTGGAAATGGAGTAAGGTG  663
             |||||||||||||||||||||||||||||||||||
Sbjct  1406  ATGAGTGTATTGTGAAGTGGAAATGGAGTAAGGTG  1440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39383571248


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5