BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931417
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19740.1 | Symbols: | Ribosomal protein L31e family protein... 632 0.0
AT4G26230.1 | Symbols: | Ribosomal protein L31e family protein... 375 1e-103
> AT2G19740.1 | Symbols: | Ribosomal protein L31e family protein
| chr2:8513513-8514519 FORWARD LENGTH=597
Length=597
Score = 632 bits (342), Expect = 0.0
Identities = 374/390 (96%), Gaps = 0/390 (0%)
Strand=Plus/Plus
Query 7 GAGATCGAAGCAAAATGGAGAAAGGAAAGGGAAGAAAGGAGGAGGTCGTTACCAGAGAGT 66
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 51 GAGATCGAAGCAAAATGGAGAAAGGAAAGGGAAGAAAGGAAGAGGTCGTGACCAGGGAGT 110
Query 67 ACACTATCAATCTTCACAGGCGCCTCCATAGCTGTACGTTCAAGAAGAAGGCACCCAATG 126
||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 111 ACACTATCAATCTCCACAGGCGCCTCCATAGCTGCACCTTCAAGAAGAAGGCACCCAATG 170
Query 127 CCATCAAAGAGATCAGGAAGTTTGCATTGAAAGCAATGGGAACAAAGGACGTTAGAGTCG 186
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 171 CCATTAAAGAGATCAGGAAGTTTGCATTGAAAGCAATGGGAACAAAGGACGTTAGAGTGG 230
Query 187 ATGTTAAACTCAACAAGCAGATATGGAGCAAAGGTATCAGAGGTCCTCCGAGGAGAATCA 246
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 231 ATGTTAAACTCAACAAGCAGATATGGAGCAAAGGTATCCGAGGTCCCCCGAGGAGAATTA 290
Query 247 GAGTCCGTGTTGCCCGTAAGAGGAACGATGATGAAGATGCCAAGGAAGAGTTTTTCTCAC 306
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 291 GAGTCCGTGTTGCCCGTAAGAGAAACGATGATGAAGATGCCAAGGAAGAGTTCTTCTCCC 350
Query 307 TCGTCACTGTCGCTGAGATTCCGGCTGAAGGATTGTCTGGTTTGGGTACTAAGGTCATTG 366
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 351 TCGTCACCGTCGCTGAGATTCCGGCTGAAGGATTATCTGGTTTGGGTACTAAGGTCATTG 410
Query 367 AAGAAGAGGAGTGAAAATTGGTGAATGTAC 396
||||||||||||||||||||||||||||||
Sbjct 411 AAGAAGAGGAGTGAAAATTGGTGAATGTAC 440
> AT4G26230.1 | Symbols: | Ribosomal protein L31e family protein
| chr4:13285825-13286791 FORWARD LENGTH=674
Length=674
Score = 375 bits (203), Expect = 1e-103
Identities = 300/347 (86%), Gaps = 6/347 (2%)
Strand=Plus/Plus
Query 33 AAGGGAA-GAAAGGAGGAGGTCGTTACCAGAGAGTACACTATCAATCTTCACAGGCGCCT 91
||||||| |||| |||||||| || |||||||||||||| ||||| |||||||| |||||
Sbjct 89 AAGGGAAGGAAA-GAGGAGGTGGTGACCAGAGAGTACACCATCAACCTTCACAGACGCCT 147
Query 92 CCATAGCTGTACGTTCAAGAAGAAGGCACCCAATGCCATCAAAGAGATCAGGAAGTTTGC 151
||||||||||| || ||||||||||| || || || ||||| ||||| |||||||||||
Sbjct 148 TCATAGCTGTACCTTTAAGAAGAAGGCTCCAAAGGCGATCAAGGAGATAAGGAAGTTTGC 207
Query 152 ATTGA-AA-GCAATGGGAACAAAGGACGTTAGAGTCGATGTTAAACTCAACAAGCAGATA 209
||| || | |||||| |||||||| || ||||| ||||||||| | |||||||||||
Sbjct 208 --TGAGAAGGAAATGGGGACAAAGGATGTGAGAGTGGATGTTAAATTGAACAAGCAGATT 265
Query 210 TGGAGCAAAGGTATCAGAGGTCCTCCGAGGAGAATCAGAGTCCGTGTTGCCCGTAAGAGG 269
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 266 TGGAGCAAAGGTATCAGAGGTCCTCCGAGGAGAATCAGAGTCCGAGTTGCTCGTAAGAGA 325
Query 270 AACGATGATGAAGATGCCAAGGAAGAGTTTTTCTCACTCGTCACTGTCGCTGAGATTCCG 329
|| |||||||||||||| ||||||||||| ||||| || |||||||| ||||| || ||
Sbjct 326 AATGATGATGAAGATGCAAAGGAAGAGTTCTTCTCTCTTGTCACTGTTGCTGAAATCCCT 385
Query 330 GCTGAAGGATTGTCTGGTTTGGGTACTAAGGTCATTGAAGAAGAGGA 376
||||||||| | ||||| | || |||||| ||||||||||||||||
Sbjct 386 GCTGAAGGACTCTCTGGCCTCGGCACTAAGATCATTGAAGAAGAGGA 432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18900673624
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5