BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931419

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19720.1 | Symbols: rps15ab | ribosomal protein S15A B | chr...   647    0.0  


> AT2G19720.1 | Symbols: rps15ab | ribosomal protein S15A B | chr2:8510020-8511339 
REVERSE LENGTH=674
Length=674

 Score =  647 bits (350),  Expect = 0.0
 Identities = 393/414 (95%), Gaps = 1/414 (0%)
 Strand=Plus/Plus

Query  1    AAATCGGAATTTTTCGATCGATGGGGAGGAGAATATTGAACGATGCGTTGAGAACGATTG  60
            ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct  63   AAATCGGAA-TTTTCGATCAATGGGGAGGAGAATATTGAACGATGCATTGAGAACGATCG  121

Query  61   TGAATGCTGAGAAGCGAGGGAAAGCTTCGGTGGAATTGAAGCCTGTCTCTACCGTTATGT  120
            |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct  122  TGAATGCTGAGAAGCGAGGGAAAGCTTCGGTGGAGTTGAAACCTGTCTCTACCGTAATGT  181

Query  121  CTTCGTTTCTCAAAATCATGAAGGAGAAAGGGTACATCAAGAACTTTCAAGTCTATGATC  180
            |||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||
Sbjct  182  CTTCGTTTCTCAAAATCATGAAAGAGAAAGGGTACATCAAGAACTTCCAAGTCCATGATC  241

Query  181  CACACAGAGTTGGAAGAATAACTGTTGATCTACAAGGAAGGGTTAATGATTGCAAAGCTC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  242  CACACAGAGTTGGAAGAATAACTGTTGATCTACAAGGAAGGGTTAATGATTGCAAAGCTC  301

Query  241  TCACTTATAGGCAAGACCTCAAGGCAAACGAAATCGGGCAATACACAGAACGCACACTTC  300
            ||||||||||||| ||| | |||||||| || ||||||||||||||||||||||||||||
Sbjct  302  TCACTTATAGGCAGGACGTTAAGGCAAATGAGATCGGGCAATACACAGAACGCACACTTC  361

Query  301  CAACACGCCAGTGGGGTTATGTAGTGATCACAACTCCCGATGGCATTTTGGACCATGAAG  360
            |||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct  362  CAACGCGCCAGTGGGGTTATATAGTGATTACAACTCCCGATGGCATTTTGGATCATGAAG  421

Query  361  AAGCTATTAAACGGAATGTTGGTGGTCAGGTTCTTGGCTTCTTTCATTGAACTG  414
            ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct  422  AAGCTATTAAACGGAATGTGGGTGGTCAGGTTCTTGGTTTCTTTCATTGAACTG  475



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20408706094


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5