BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931421

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19700.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   418    2e-116


> AT2G19700.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 5 Blast hits to 5 
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr2:8504967-8505639 REVERSE LENGTH=673
Length=673

 Score =  418 bits (226),  Expect = 2e-116
 Identities = 367/432 (85%), Gaps = 22/432 (5%)
 Strand=Plus/Plus

Query  2    GAGTTTAGGTCCGATCACAATGGCAACATACGACGATGG-CAAGATGTGGTCGAAGCTCT  60
            |||||||||||||||||||||| | |||||| |||| || ||||||||||||||| ||||
Sbjct  51   GAGTTTAGGTCCGATCACAATGACTACATACAACGA-GGACAAGATGTGGTCGAATCTCT  109

Query  61   ATGCATTGGCGGATGTCGCGGCTATGTTGTATGATGATGAAACATCGGCCATGTATCCGA  120
            ||||||||||| | ||||| |||||||||||||||||||| |||   | |  |    |||
Sbjct  110  ATGCATTGGCGAAAGTCGCCGCTATGTTGTATGATGATGAGACA---G-C--G---GCGA  160

Query  121  AACTCTTTGAATTCGA-GGATCTCATGACTATGAAGTTTGATGAAGAA---GTAGAAGAA  176
            |||||||||| ||| | |||| |||||| || | ||||||||||||||   |||||||| 
Sbjct  161  AACTCTTTGACTTC-ACGGATATCATGAGTACGGAGTTTGATGAAGAAGCTGTAGAAGAT  219

Query  177  CGTGCAAAGATGGGAACAACGTCTTCGGTGGTGACACAAAATCTTAGTGAGGCTTCTACT  236
            ||||||||||||||||||||| |||||    ||||||||||||||| ||||| |||||||
Sbjct  220  CGTGCAAAGATGGGAACAACGCCTTCGACCATGACACAAAATCTTAATGAGGTTTCTACT  279

Query  237  TCTTTATCGCTCCTTGACATTGGCGCTGATCCCGTGACGCAAAACCCACAAAACCCTACT  296
            || |||||||||||||||||||||||||||||||||||||||| ||||||||||||  | 
Sbjct  280  TCCTTATCGCTCCTTGACATTGGCGCTGATCCCGTGACGCAAACCCCACAAAACCCGCCA  339

Query  297  TCTTCTTCAACCT-TACTCGTCGATGAAATCAAAGCTGAGGCTGAGATGATGGAGACA-G  354
             |||||| ||| | |||||||||||||||||   |||||  |||||||||| |||| | |
Sbjct  340  GCTTCTTTAAC-TATACTCGTCGATGAAATCTTGGCTGATTCTGAGATGATCGAGA-ATG  397

Query  355  AAGACGACTCACCAAACCCTAGTTTCAAATCTTCGT-CCATAACAGAATAGCTCTTCCAT  413
            ||| ||||||||||||||||| || ||||||||||  || |||||||||||||| ||| |
Sbjct  398  AAGCCGACTCACCAAACCCTAATTCCAAATCTTCGCGCC-TAACAGAATAGCTCGTCCCT  456

Query  414  TATTATTCGGAG  425
            | ||| ||||||
Sbjct  457  TTTTAATCGGAG  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20157367349


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5