BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931432
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19600.1 | Symbols: ATKEA4, KEA4 | K+ efflux antiporter 4 | ... 3061 0.0
> AT2G19600.1 | Symbols: ATKEA4, KEA4 | K+ efflux antiporter 4
| chr2:8479198-8483830 FORWARD LENGTH=2204
Length=2204
Score = 3061 bits (1657), Expect = 0.0
Identities = 1770/1824 (97%), Gaps = 9/1824 (0%)
Strand=Plus/Plus
Query 1 GCTCCGCCGCGCCACAATCACTGAGATGCGGCGGTGTAACAACAACACTGATAAATTCCC 60
|||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 53 GCTCCGCCGCGCCACATTCACTGAGATGCGGCGGTGTAAAAACAACACTGACAAATTCTC 112
Query 61 TGTGAAAACGATGAGGCTTCTTACGCTTCTTCTGATCTGTA--GT-TTCTTCTTC-TCT- 115
||||| ||||||||||||||| ||||||||||||||||||| | ||||||||| |||
Sbjct 113 TGTGATAACGATGAGGCTTCTAACGCTTCTTCTGATCTGTACTTTCTTCTTCTTCTTCTC 172
Query 116 C-TTGCTTATTCCGCCGAGTCCGATAACGAGACTGACTCAGTTGTTGTTACACGTGAGAT 174
| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 173 CTTTGCTTATTCCGCCGAGTCAGATAACGAGACTGACTCA---GTTGTTACACGTGAGAT 229
Query 175 CAATGGAACCGTCGCTGAGTCCAATGCCACGAGTGCGAAACCTAAAGAAGATAGTTTCGC 234
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 230 CAATGGAACCGTCGTTGAGTCCAATGCCACGAGTGCGAAACCTAGGGAAGATAGTTTCGC 289
Query 235 TGATATGATCGATCGGGCACTTGAGAAAGAGTTTCCTGATAATGACCAGAACGAAGTTCC 294
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGATATGATCGATCGAGCACTTGAGAAAGAGTTTCCTGATAATGACCAGAACGAAGTTCC 349
Query 295 TGATCCAGGAAGCTTCAATAATAGTGTTGCTGATCAGCAGGCTGTTCTAGAGACTGTTGC 354
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 350 TGATCCAGGAAGCTTCAATAATAGTGTTGCTGATCAGCAGGCGGTTCTAGAGACTGTTGC 409
Query 355 ACGAGTTAAGCCAAAGAAAAATGAAACCAAGACCAAGGAGGAGAAATCGTTCTTCAATTT 414
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 410 ACGAGTTAAGCCAAAGAAAAATGAAACCAAGACCAAGGAGGAGAAATCCTTCTTTAATTT 469
Query 415 GGATAGCGAGAATGGCGTAGAAGATACTCCAAGACTGATAGATAGGAAGGACAACGTTTT 474
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 470 GGATAACGAGAATGGCGTAGAGGATACTCCAAGACTGATAGATAGGAAGGACAACGTTTT 529
Query 475 TATTATGTCCAATCCAAAATCCAAGTACCCTGTACTGCAGCTAGATTTAAGGCTGATATC 534
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TATAATGTCCAATCCAAAATCCAAGTACCCTGTACTGCAGCTAGATTTAAGGCTGATATC 589
Query 535 AGATTTGGTCGTCGTCATTGTTTCTGCTACTTGTGGAGGAATTGCCTTTGCATGCGCTGG 594
|||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||
Sbjct 590 AGATTTGGTCGTCGTCATTGTTTCTGCTACTTGTGGTGGAATTGCCTTTGCTTGTGCGGG 649
Query 595 TCAACCGGTCATTACTGGGTATCTATTGGCTGGATCTATAATTGGACCGGGCGGGTTAAG 654
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 650 TCAACCGGTCATTACTGGGTATCTATTGGCTGGATCTATCATTGGACCGGGCGGGTTAAG 709
Query 655 CTTTGTTAGTGAAATGGTGCAGGTTGAAACAGTAGCTCAGTTTGGTGTTATCTTTCTCCT 714
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 710 CTTTGTTAGTGAAATGGTGCAGGTCGAAACAGTAGCTCAGTTTGGTGTTATCTTTCTCCT 769
Query 715 TTTTGCTTTAGGATTAGAATTTTCTGCAGCGAAGCTTCGTGTGGTTCGTGCAGTAGCTAT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TTTTGCTTTAGGATTAGAATTTTCTGCAGCGAAGCTTCGTGTGGTTCGTGCAGTAGCTAT 829
Query 775 TCCAGGAGGTCTTCTTCAGATATTTTTGTTCATGTGCTTGAGTGGAATAACAGCCTCGTT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TCCAGGAGGTCTTCTTCAGATATTTTTGTTCATGTGCTTGAGTGGAATAACAGCCTCGTT 889
Query 835 ATGTGGCGGTAAACTAACAGAAGGAATATTTGTAGGCGCATTTCTTTCGATGTCATCAAC 894
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 890 ATGTGGCGGTAAACTAACAGAAGGAATATTCGTAGGCGCATTTCTATCGATGTCATCAAC 949
Query 895 AGCAGTGGTTTTGAAATTTTTGATGGAAAGAAATAGCATAAGTGCTCTGCATGGCCAGAT 954
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 950 AGCAGTGGTTTTGAAATTTTTAATGGAAAGAAATAGCATAAGTGCTCTACATGGCCAGAT 1009
Query 955 AACCGTGGGAACTCTTATTCTTCAGGATTGTGCTGTGGGCTTGCTGTTTGCTCTCCTGCC 1014
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AACTGTAGGAACTCTTATTCTTCAGGATTGTGCTGTGGGCTTGCTGTTTGCTCTCCTGCC 1069
Query 1015 AGTTCTTGGTGGCACCTCTGGTGTCCTTCAAGGAGTGTTGTCCATGGCTAAATCGTTGGC 1074
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1070 AGTTCTTGGTGGCACATCTGGTGTCCTTCAAGGAGTGTTGTCCATGGCGAAATCGTTGGC 1129
Query 1075 TATTTTGATTGCGTTTTTGGGAGCTTTGTTTGTATTGTCCCGTACCTGGGTACCTTGGTT 1134
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1130 TATTTTGATTGCGTTTTTGGGAGCTTTGTTTGTATTATCCCGTACCTGGGTACCTTGGTT 1189
Query 1135 TCTAAAACTTATGACAAGCCTTTCTTCTCAGACTAACGAGCTCTATCAGTTGGCCGCTGT 1194
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1190 TCTAAAACTTATGACAAGCCTTTCTTCTCAGACTAATGAGCTCTATCAGTTGGCCGCTGT 1249
Query 1195 AGCATTTTGTTTACTTGTCGCTTGGTGTAGTGACAAGCTCGGTCTAAGTCTTGAGTTGGG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1250 AGCATTTTGTTTACTTGTCGCTTGGTGTAGTGACAAGCTCGGTCTAAGTCTGGAGTTGGG 1309
Query 1255 TTCCTTTGCGGCAGGAGTGATGATCTCAACAACTGATCTCGCTCAGCATACTCTTGAGCA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1310 TTCCTTTGCGGCAGGAGTGATGATCTCAACAACTGATCTCGCTCAGCATACTCTTGAACA 1369
Query 1315 GGTGGAACCCATCCGCAAtttttttGCAGCACTGTTCCTTGCTAGTATTGGCATGTTGAT 1374
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1370 GGTGGAACCCATCCGCAATTTTTTTGCAGCACTGTTCCTTGCTAGTATCGGCATGTTGAT 1429
Query 1375 ACATATGCACTTCTTGTGGAACCATGTTGACATTCTGCTAGCAGCTGTGTTACTGGTGAT 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 ACATATGCACTTCTTGTGGAACCATGTTGACATTCTGCTAGCAGCTGTGTTACTGGTGAT 1489
Query 1435 AGTGATAAAGACCGTGGTAGTTGCGATTGTTGTTAAAGTCTTTGGATACAATAACAAAAC 1494
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1490 AGTGATAAAGACGGTGGTAGTTGCTATCGTTGTTAAAGTCTTTGGATACAATAACAAAAC 1549
Query 1495 TGCAGTACTTGTTGGAATGTCCCTTGCACAGATTGGGGAATTTGCTTTTGTTCTGCTAAG 1554
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 TGCAGTACTTGTTGGTATGTCCCTTGCACAGATTGGGGAATTTGCTTTTGTTCTGCTAAG 1609
Query 1555 TCGAGCATCTAATCTTCACCTAATTGAGAGCAAATTGTACCTTTTGCTTCTGGGAACAAC 1614
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1610 TCGAGCATCTAATCTTCACCTAATTGAGAGCAAATTGTACCTCCTGCTTCTGGGAACAAC 1669
Query 1615 TGCTTTAAGCCTGGTAACAACACCATTGCTATTCAAGTTGATACCAGCAGTTGTACATTT 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 TGCTTTAAGCCTGGTAACAACACCATTGCTATTCAAGTTGATACCAGCAGTTGTACATTT 1729
Query 1675 AGGAGTGCTCTTACGGTGGTTCTCTCCCGACAGCTCAACCGAGATTGGTTTCAAAGGAGA 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 AGGAGTGCTCTTACGGTGGTTCTCTCCCGACAGCTCAACCGAGATTGGTTTCAAAGGAGA 1789
Query 1735 GTTGTATCACTCAGAGAGCGCAAAGCGTATATCACTGATGATCCAAGGTTCTCTTCACGA 1794
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 GTTGTATCACTCAGAGAGTGCAAAGCGTATATCACTGATGATCCAAGGTTCTCTTCACGA 1849
Query 1795 CTCTTGAAGTGTTGATGATATGTT 1818
||||||||||||||||| ||||||
Sbjct 1850 CTCTTGAAGTGTTGATGGTATGTT 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90109978275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5