BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931437
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19580.1 | Symbols: TET2 | tetraspanin2 | chr2:8472134-84751... 1367 0.0
AT2G19582.1 | Symbols: | other RNA | chr2:8474446-8475221 FORW... 411 7e-114
> AT2G19580.1 | Symbols: TET2 | tetraspanin2 | chr2:8472134-8475153
REVERSE LENGTH=1204
Length=1204
Score = 1367 bits (740), Expect = 0.0
Identities = 817/854 (96%), Gaps = 6/854 (1%)
Strand=Plus/Plus
Query 5 AGAGAGACAGAATTTAATGGCGTTAGCGAATAACTTAACGGCGATACTCAACTTACTAGC 64
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AGAGAGAGAAAATTTAATGGCGTTAGCGAATAACTTAACGGCGATACTCAACTTACTAGC 176
Query 65 GTTACTCTGTTCCATACCAATAACGGCGTCAGGTATATGGCTAGCTTCAAAACCCGACAA 124
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 177 GTTACTCTGTTCCATACCAATAACGGCGTCAGGTATATGGCTAGCTTCAAAGCCAGACAA 236
Query 125 CGAGTGCGTCAATCTCCTCCGTTGGCCCGTCGTCGTCCTCGGCGTCCTCATCCTCGTCGT 184
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 237 CGAGTGTGTCAATCTCCTCCGTTGGCCCGTTGTCGTCCTCGGCGTTCTCATCCTCGTCGT 296
Query 185 CTCCGCCACAGGCTTCATCGGCGCCTACAAGTACAAGGAGACTTTACTAGCGGTTTACTT 244
||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 297 CTCCGCCACAGGCTTCATCGGCGCCTACAAGTACAAGGAAACTCTACTGGCGGTTTACTT 356
Query 245 GTGTTGTATGGCGATACTGATCGGACTTTTGTTGGTGGTTCTGATATTTGCTTTTGTCGT 304
||| |||||||||||| |||||||||||||| |||||||||| |||||||| || |||||
Sbjct 357 GTGCTGTATGGCGATATTGATCGGACTTTTGCTGGTGGTTCTTATATTTGCATTCGTCGT 416
Query 305 GACCCGACCCGATGGATCGTATCGGGTTCCGGGTAGAGGTTACAAAGAGTATAGGCTTGA 364
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 417 GACCCGGCCCGATGGATCGTATCGGGTTCCGGGTAGAGGTTATAAAGAGTATAGGCTTGA 476
Query 365 AGGGTTCTCGAATTGG-TTGAAGGAGAACGTTGTGGATTCCAAGAACTGGGGGAGATTAA 423
|||||||||||||||| || |||||||||||||||||||||||||||||||| || |||
Sbjct 477 AGGGTTCTCGAATTGGCTT-AAGGAGAACGTTGTGGATTCCAAGAACTGGGGAAGGCTAA 535
Query 424 GGGCTTGTTTGGCTGATAC-AAGTGTTTGTCCTAAACTCAACCAAGAGTTCATCACCGCC 482
||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||
Sbjct 536 GGGCTTGTTTGGCTGATACTAA-TGTTTGTCCTAAACTCAACCAAGAATTCATCACCGCC 594
Query 483 GATCAGTTCTTCTCCTCCTCTAAGATCACTCCTCTCCAGTCCGGGTGCTGCAAACCACCG 542
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 595 GATCAGTTCTTCTCCTCCTCTAAGATCACTCCTCTCCAGTCCGGCTGCTGCAAACCACCA 654
Query 543 ACCGCATGTGGCTACAACTTTGTGAACCCGACACTGTGGCTAAACCCGACGAATATGGCT 602
||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct 655 ACCGCATGTGGCTACAACTTTGTGAACCCAACACTGTGGCTAAATCCAACCAATATGGCT 714
Query 603 GCAGACGCAGACTGTTACCTATGGAGCAATGACCAAAGCCAGCTTTGTTACAATTGCAAC 662
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GCAGACGCAGACTGTTACTTATGGAGCAATGACCAAAGCCAGCTTTGTTACAATTGCAAC 774
Query 663 TCATGCAAAGCTGGTCTATTGGGAAACCTTAGAAAAGAATGGCGTAAAGCAAATCTCATA 722
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TCATGCAAAGCTGGTTTATTGGGAAACCTTAGAAAAGAATGGCGTAAAGCAAATCTCATA 834
Query 723 CTGATCATCACAGTCGTTGTTCTCATATGGGTTTATGTTATTGCTTGTAGCGCGTTTAGG 782
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CTTATCATCACAGTCGTTGTTCTCATATGGGTTTATGTTATTGCTTGTAGCGCGTTTAGG 894
Query 783 AATGCTCAGACTGAGGATCTCTTCCGCAAATACAAACAAGGTTGGGTCTAAAATGTGTTT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AATGCTCAGACTGAGGATCTCTTCCGCAAATACAAACAAGGTTGGGTCTAAAATGTGTTT 954
Query 843 GTGT--ATAAATTT 854
|||| ||||||||
Sbjct 955 GTGTCTATAAATTT 968
> AT2G19582.1 | Symbols: | other RNA | chr2:8474446-8475221 FORWARD
LENGTH=657
Length=657
Score = 411 bits (222), Expect = 7e-114
Identities = 256/272 (94%), Gaps = 4/272 (1%)
Strand=Plus/Minus
Query 242 CTTGTGTTGTATGGCGATACTGATCGGACTTTTGTTGGTGGTTCTGATATTTGCTTTTGT 301
|||||| |||||||||||| |||||||||||||| |||||||||| |||||||| || ||
Sbjct 270 CTTGTGCTGTATGGCGATATTGATCGGACTTTTGCTGGTGGTTCTTATATTTGCATTCGT 211
Query 302 CGTGACCCGACCCGATGGATCGTATCGGGTTCCGGGTAGAGGTTACAAAGAGTATAGGCT 361
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 210 CGTGACCCGGCCCGATGGATCGTATCGGGTTCCGGGTAGAGGTTATAAAGAGTATAGGCT 151
Query 362 TGAAGGGTTCTCGAATTGG-TTGAAGGAGAACGTTGTGGATTCCAAGAACTGGGGGAGAT 420
||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 150 TGAAGGGTTCTCGAATTGGCTT-AAGGAGAACGTTGTGGATTCCAAGAACTGGGGAAGGC 92
Query 421 TAAGGGCTTGTTTGGCTGATAC-AAGTGTTTGTCCTAAACTCAACCAAGAGTTCATCACC 479
|||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct 91 TAAGGGCTTGTTTGGCTGATACTAA-TGTTTGTCCTAAACTCAACCAAGAATTCATCACC 33
Query 480 GCCGATCAGTTCTTCTCCTCCTCTAAGATCAC 511
||||||||||||||||||||||||||||||||
Sbjct 32 GCCGATCAGTTCTTCTCCTCCTCTAAGATCAC 1
Score = 339 bits (183), Expect = 4e-92
Identities = 197/204 (97%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 5 AGAGAGACAGAATTTAATGGCGTTAGCGAATAACTTAACGGCGATACTCAACTTACTAGC 64
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 AGAGAGAGAAAATTTAATGGCGTTAGCGAATAACTTAACGGCGATACTCAACTTACTAGC 414
Query 65 GTTACTCTGTTCCATACCAATAACGGCGTCAGGTATATGGCTAGCTTCAAAACCCGACAA 124
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 413 GTTACTCTGTTCCATACCAATAACGGCGTCAGGTATATGGCTAGCTTCAAAGCCAGACAA 354
Query 125 CGAGTGCGTCAATCTCCTCCGTTGGCCCGTCGTCGTCCTCGGCGTCCTCATCCTCGTCGT 184
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 353 CGAGTGTGTCAATCTCCTCCGTTGGCCCGTTGTCGTCCTCGGCGTTCTCATCCTCGTCGT 294
Query 185 CTCCGCCACAGGCTTCATCGGCGC 208
||||||||||||||||||||||||
Sbjct 293 CTCCGCCACAGGCTTCATCGGCGC 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41644107863
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5