BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931443
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19520.1 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | T... 2699 0.0
AT4G29730.1 | Symbols: NFC5, MSI5 | nucleosome/chromatin assemb... 1205 0.0
> AT2G19520.1 | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 |
Transducin family protein / WD-40 repeat family protein | chr2:8455936-8459525
FORWARD LENGTH=1884
Length=1884
Score = 2699 bits (1461), Expect = 0.0
Identities = 1529/1563 (98%), Gaps = 0/1563 (0%)
Strand=Plus/Plus
Query 10 agagagagagGAAAATGGAGAGCGACGAAGCAGCAGCAGTGTCTCCTCAAGCAACGACAC 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 AGAGAGAGAGGAAAATGGAGAGCGACGAAGCAGCAGCAGTGTCTCCTCAAGCAACGACAC 116
Query 70 CGAGCGGAGGAACCGGAGCTTCTGGGCCGAAGAAGAGAGGTCGGAAACCTAAAAGCAAGG 129
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 117 CGAGCGGAGGAACCGGAGCTTCTGGGCCGAAGAAGAGAGGTCGGAAACCTAAAACCAAGG 176
Query 130 ACGATTCTCAGACGCCGTCGTCGCAGCAACAGAGCGGTGGCAAAATGAAAGAAAGTGGGA 189
| |||||||||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 177 AAGATTCTCAGACGCCGTCGTCTCAGCAACAGAGCGATGTTAAAATGAAAGAAAGTGGGA 236
Query 190 AGAAAACGCAGCAGACGCCGAGTGTTGACGAGAAGTACTCTCAGTGGAAAGGTCTCGTCC 249
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AGAAAACGCAGCAGTCGCCGAGTGTTGACGAGAAGTACTCTCAGTGGAAAGGTCTCGTCC 296
Query 250 CCATTCTCTACGACTGGCTCGCTAACCATAACCTCGTCTGGCCTTCACTCTCTTGCAGAT 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCATTCTCTACGACTGGCTCGCTAACCATAACCTCGTCTGGCCTTCACTCTCTTGCAGAT 356
Query 310 GGGGTCCGCAGCTTGAGCAAGCAACCTACAAGAATCGCCAGCGTCTGTATCTCTCAGAGC 369
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 357 GGGGTCCGCAGCTTGAGCAAGCAACCTACAAGAATCGCCAGCGTCTGTACCTCTCAGAGC 416
Query 370 AAACTGATGGAAGTGTGCCCAATACTTTGGTCATAGCAAATTGTGAAGTTGTTAAGCCAA 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AAACTGATGGAAGTGTGCCCAATACTTTGGTCATAGCAAATTGTGAAGTTGTTAAGCCAA 476
Query 430 GGGTCGCTGCAGCAGAGCACATTTCTCAGTTCAATGAAGAAGCACGTTCTCCATTTGTGA 489
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGGTTGCTGCAGCAGAGCACATTTCTCAGTTCAATGAAGAAGCACGTTCTCCATTTGTGA 536
Query 490 AGAAGTACAAGACCATCATTCACCCTGGAGAGGTTAACAGAATCAGGGAACTCCCACAGA 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGAAGTACAAGACCATCATTCACCCTGGAGAGGTTAACAGAATCAGGGAACTCCCACAGA 596
Query 550 ATAGTAAGATTGTTGCTACTCACACCGACAGTCCTGATGTTCTCATTTGGGATGTTGAAA 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ATAGTAAGATTGTTGCTACTCACACCGACAGTCCTGATGTTCTCATTTGGGATGTTGAAA 656
Query 610 CCCAACCAAACCGTCATGCTGTGCTTGGAGCTGCAAATTCCCGTCCAGATTTGATACTAA 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CCCAACCAAACCGTCATGCTGTGCTTGGAGCTGCAAATTCCCGTCCAGATTTGATACTAA 716
Query 670 CTGGGCACCAAGATAATGCTGAATTTGCTCTTGCAATGTGCCCAACCGAACCCTTTGTGC 729
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 717 CTGGGCACCAAGATAATGCTGAATTTGCTCTTGCCATGTGCCCAACGGAACCCTTTGTGC 776
Query 730 TCTCTGGAGGCAAGGACAAGTCAGTTGTGTTGTGGAGTATCCAAGATCACATCACAACGG 789
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 777 TCTCCGGAGGCAAGGACAAGTCAGTTGTTTTGTGGAGTATCCAAGATCACATCACAACGA 836
Query 790 TTGGGACAGATTCCAAATCTTCTGGATCTATCATCAAACAGACTGGTGAAGGTAGTGATA 849
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 837 TTGGGACAGATTCCAAATCATCTGGATCTATCATCAAACAGACTGGTGAAGGTACTGATA 896
Query 850 AGAATGAGAGTCCTACCGTTGGCCCACGAGGTGTATATCATGGCCATGAAGATACAGTTG 909
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AGAATGAGAGTCCTACTGTTGGCCCACGAGGTGTATATCATGGCCATGAAGATACAGTTG 956
Query 910 AAGATGTGGCATTCAGTCCGACGAGTGCACAAGAATTCTGCAGTGTTGGTGATGATTCTT 969
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AAGATGTGGCATTCAGCCCGACGAGTGCACAAGAATTCTGCAGTGTTGGTGATGATTCTT 1016
Query 970 GCCTTATACTATGGGATGCAAGAACTGGCACAAACCCTGTCACTAAGGTTGAGAAGGCGC 1029
||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||
Sbjct 1017 GCCTTATACTATGGGATGCGAGAACTGGCACAAACCCTGTCACGAAGGTTGAAAAAGCGC 1076
Query 1030 ATGATGCTGATCTTCATTGTGTCGATTGGAATCCCCATGACGACAATCTGATCCTGACAG 1089
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1077 ATGATGCTGATCTTCATTGTGTTGATTGGAATCCTCATGACGACAATCTGATCCTGACAG 1136
Query 1090 GGTCAGCAGACAACACTGTCCGGTTGTTTGATCGTAGGAAGCTTACCGCTAATGGAGTCG 1149
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1137 GGTCAGCAGACAACACTGTCCGGTTGTTTGATCGTAGGAAGCTTACCGCTAATGGAGTTG 1196
Query 1150 GGTCACCTATTTACAAATTTGAGGGCCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTC 1209
| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1197 GTTCGCCTATTTACAAATTTGAGGGACACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTC 1256
Query 1210 CTGATAAGTCATCTGTCTTTGGGAGCTCTGCAGAAGACGGTCTCTTGAACATCTGGGATT 1269
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1257 CTGATAAGTCATCCGTCTTTGGGAGCTCTGCAGAAGATGGTCTCTTGAACATCTGGGATT 1316
Query 1270 ATGACAGGGTCAGTAAGAAGTCTGATCGTGCAGCTAAAAGCCCCGCTGGGCTCTTCTTCC 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ATGACAGGGTCAGTAAGAAGTCTGATCGTGCAGCTAAAAGCCCCGCTGGGCTCTTCTTCC 1376
Query 1330 AGCATGCTGGTCACAGGGACAAAGTTGTTGATTTCCACTGGAATGCTTCAGACCCTTGGA 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AGCATGCTGGTCACAGGGACAAAGTTGTTGATTTCCACTGGAATGCTTCAGACCCTTGGA 1436
Query 1390 CAATTGTCAGTGTTTCTGATGACTGTGAGACTACTGGTGGAGGTGGAACATTGCAGATAT 1449
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CTATTGTCAGTGTTTCTGATGACTGTGAGACTACTGGTGGAGGTGGAACATTGCAGATAT 1496
Query 1450 GGCGGATGAGTGACTTGATTTACAGACCAGAAGAAGAAGTCGTGGCAGAATTGGAGAAGT 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GGCGGATGAGTGACTTGATTTACAGACCAGAAGAAGAAGTCGTGGCAGAATTGGAGAAGT 1556
Query 1510 TCAAGTCGCATGTTTTGACTTGTGCCTCCAAGCCTTAAGAGTAAAGAAAAACCACTGTCT 1569
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1557 TCAAGTCGCATGTTATGACTTGTGCCTCCAAGCCTTAAGAGTAAAGAAAACCCATTGTCT 1616
Query 1570 ATC 1572
|||
Sbjct 1617 ATC 1619
> AT4G29730.1 | Symbols: NFC5, MSI5 | nucleosome/chromatin assembly
factor group C5 | chr4:14558985-14562538 REVERSE LENGTH=1750
Length=1750
Score = 1205 bits (652), Expect = 0.0
Identities = 952/1096 (87%), Gaps = 24/1096 (2%)
Strand=Plus/Plus
Query 462 AATGAAGAA-GCACGTTCTCCATTTGTGAAGAAGTACAAGACCATCATTCACCCTGGAGA 520
|||||| || |||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 395 AATGAA-AAGGCACACTCTCCATTTGTGAAGAAGTACAAGACCATCATCCACCCTGGAGA 453
Query 521 GGTTAACAGAATCAGGGAACTCCCACAGAATAGTAAGATTGTTGCTACTCACACCGACAG 580
||| |||||||| ||||||||||| || ||||| |||||||| |||||||||||||||||
Sbjct 454 GGTCAACAGAATTAGGGAACTCCCTCAAAATAGCAAGATTGTAGCTACTCACACCGACAG 513
Query 581 TCCTGATGTTCTCATTTGGGATGTTGAAACCCAACCAAACC-GTCATGCTGTGCTTGGAG 639
||||||| ||||||||||| | ||| || |||||| ||| || |||||||||||||||
Sbjct 514 TCCTGATATTCTCATTTGGAACACTGAGACTCAACCAGACCGGT-ATGCTGTGCTTGGAG 572
Query 640 CTGCAAATTCCCGTCCAGATTTGATACTAACTGGGCACCAAGATAATGCTGAATTTGCTC 699
|| || |||| |||||||||||| |||||| ||||||||| ||| |||||||||||||||
Sbjct 573 CTCCAGATTCTCGTCCAGATTTGTTACTAATTGGGCACCAGGATGATGCTGAATTTGCTC 632
Query 700 TTGCAATGTGCCCAACCGAACCCTTTGTGCTCTCTGGAGGCAAGGACAAGTCAGTTGTGT 759
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| | |
Sbjct 633 TTGCAATGTGCCCAACCGAACCTTTTGTTCTCTCTGGAGGCAAGGACAAGTCCGTTATTT 692
Query 760 TGTGGAGTATCCAAGATCACATCACAACGGTTGGGACAGATTCCAAATCTTCTGGATCTA 819
|||||| ||||||||| || ||||||| || ||| | ||||||||||| ||||||| |
Sbjct 693 TGTGGAATATCCAAGACCATATCACAATGGCTGGTTCGGATTCCAAATCCCCTGGATCCA 752
Query 820 TCATCAAACAGACTGGTGAAGGTAGTGATAAGAA-T-GAGAGTCCTACCGTTGGCCCACG 877
| |||| ||||||||||||||||||||||| || | | | ||||| | |||||||| ||
Sbjct 753 GCTTCAAGCAGACTGGTGAAGGTAGTGATAA-AACTGGTG-GTCCTTCTGTTGGCCCTCG 810
Query 878 AGGTGTATATCATGGCCATGAAGATACAGTTGAAGATGTGGCATTCAGTCCGA-CGAGTG 936
||| ||||| ||||||| ||||||| |||||||| ||||||||| |||| | | ||||
Sbjct 811 AGGCATATATAATGGCCACAAAGATACTGTTGAAGACGTGGCATTCTGTCC-ATCTAGTG 869
Query 937 CACAAGAATTCTGCAGTGTTGGTGATGATTCTTGCCTTATACTATGGGATGCAAGAACTG 996
||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 870 CACAAGAATTCTGCAGTGTTGGTGACGATTCTTGCCTTATGCTATGGGACGCAAGAACTG 929
Query 997 GCACAAACCCTGTCACT-AAGGTTGAGAAGGCGCATGATGCTGATCTTCATTGTGTCGAT 1055
|||| | |||| || | |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 930 GCACTAGTCCTGCCA-TGAAGGTTGAGAAGGCACATGATGCTGATCTTCACTGTGTCGAT 988
Query 1056 TGGAATCCCCATGACGACAATCTGATCCTGACAGGGTCAGCAGACAACACTGTCCGGT-T 1114
|||||||| |||||| | |||||||||||||| ||||||||||| |||||||||| || |
Sbjct 989 TGGAATCCTCATGACAATAATCTGATCCTGACTGGGTCAGCAGATAACACTGTCC-GTGT 1047
Query 1115 GTTTGATCGTAGGAAGCTTACCGCTAATGGAGTCGGGTCACCTATTTACAAATTTGAGGG 1174
|||||| || | || |||||| | |||||||| || |||||| ||||||||||||| ||
Sbjct 1048 GTTTGACCGCCGAAACCTTACCTCAAATGGAGTTGGTTCACCTGTTTACAAATTTGAAGG 1107
Query 1175 CCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCTGATAAGTCATCTGTCTTTGGGAG 1234
||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1108 CCACAGAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCTGATAAATCATCTGTTTTTGGGAG 1167
Query 1235 CTCTGCAGAAGACGGTCTCTTGAACATCTGGGATTATGACAGGGTCAGTAAGAAGTCTGA 1294
||||||||||| |||||||||||||| ||||||| ||| ||||| | |||||||||||
Sbjct 1168 TTCTGCAGAAGATGGTCTCTTGAACATATGGGATTGTGATAGGGTTGGCAAGAAGTCTGA 1227
Query 1295 TCGTGCAGCTAAAAGC-CCCGCTGGGCTCTTCTTCCAGCATGCTGGTCACAGGGACAAAG 1353
|||||| | |||| | || | |||||| |||||||||||||||||||||||||||||||
Sbjct 1228 GCGTGCAACCAAAA-CTCCTGATGGGCTTTTCTTCCAGCATGCTGGTCACAGGGACAAAG 1286
Query 1354 TTGTTGATTTCCACTGGAATG-C--TTCAGACCCTTGGACAATTGTCAGTGTTTCTGATG 1410
| || || ||||||||| | | | || | |||||||||| ||||||||||||||||||
Sbjct 1287 TGGTCGACTTCCACTGG-A-GCCTATTGA-ACCCTTGGACTATTGTCAGTGTTTCTGATA 1343
Query 1411 ACTGTGAGACTACT-GGTGGAGGTGGAACATTGCAGATATGGCGGATGAGTGACTTGATT 1469
| ||||||| || | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1344 ATTGTGAGAGTA-TCGGTGGAGGTGGTACATTGCAGATATGGCGGATGAGTGACTTGATT 1402
Query 1470 TACAGACCAGAAGAAGAAGTCGTGGCAGAATTGGAGAAGTTCAAGTCGCATGTTTTGACT 1529
|||||||| ||||| |||||| || |||| | ||||| |||||||| |||||||| ||
Sbjct 1403 TACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAAATTCAAGTCACATGTTTTCACA 1462
Query 1530 TGTGCCTCCAAGCCTT 1545
||| |||||||| |||
Sbjct 1463 TGTACCTCCAAGTCTT 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77610042570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5