BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931448
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19470.1 | Symbols: ckl5 | casein kinase I-like 5 | chr2:843... 2156 0.0
AT4G08800.1 | Symbols: | Protein kinase superfamily protein | ... 676 0.0
> AT2G19470.1 | Symbols: ckl5 | casein kinase I-like 5 | chr2:8433611-8436553
REVERSE LENGTH=1800
Length=1800
Score = 2156 bits (1167), Expect = 0.0
Identities = 1289/1349 (96%), Gaps = 4/1349 (0%)
Strand=Plus/Plus
Query 1 TTAGGGTTTTTCCAATTGGGTATGGAGCCTCGTGTCGGGAATAAGTTCCGCCTTGGCCGC 60
||||||||||| |||||||||||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 238 TTAGGGTTTTTTCAATTGGGTATGGAACCTCGTGTTGGGAACAAGTTTCGCCTTGGCCGC 297
Query 61 AAAATTGGAAGCGGCTCATTCGGAGAGATTTACCTTGGAACTGATGTTCAGACTAACGAA 120
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 298 AAAATTGGGAGCGGCTCTTTCGGAGAGATTTACCTCGGAACTGATGTTCAGACTAACGAA 357
Query 121 GAGGTTGCTATTAAGCTTGAAAATGTGAAGACTGCGCATCCGCAATTGTCGTATGAGTCG 180
|| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 358 GAAGTTGCTATTAAGCTTGAAAGTGTGAAGACTGCGCATCCGCAATTGTCATATGAGTCG 417
Query 181 AGGATATATAGAGTTCTTCAGGGTGGAACTGGGATTCCAAATATGAAATGGTATGGTGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGGATATATAGAGTTCTTCAGGGTGGAACTGGGATTCCAAATATGAAATGGTATGGTGTT 477
Query 241 GAGGGGGACTACAATGTCTTAGTGATGGATTTGCTTGGTCCTAGCCTTGAAGATCTGTTT 300
||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||
Sbjct 478 GAGGGGGACTACAATGTCTTAGTCATGGATTTGCTTGGTCCAAGTCTTGAAGATTTGTTT 537
Query 301 GGTTATTGCCATAGGAAGTTTAGCTTGAAGACTGTTCTTATGCTTGCTGATCAAATGATA 360
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGTTATTGCAAGAGGCAGTTTAGCTTGAAGACTGTTCTTATGCTTGCTGATCAAATGATA 597
Query 361 AATCGTCTCGAGTTCATTCATTCTAAGTCGTATCTTCATCGTGATATAAAGCCGGATAAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AATCGTCTCGAGTTCATTCATTCTAAGTCGTATCTTCATCGTGATATAAAGCCGGATAAT 657
Query 421 TTTCTCATGGGTTTAGGGAGGCGTGCAAATCAGGTCTACATCATAGACTATGGCTTGGCT 480
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 658 TTTCTCATGGGCTTAGGGAGGCGGGCAAATCAGGTCTACATCATAGACTATGGTTTGGCT 717
Query 481 AAGAAATATAGAGACAGCTCAACTCATCGACATATCCCATACAGGGAGAATAAAAGTCTA 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 718 AAGAAATATAGAGACAGCTCAACTCATAGACATATCCCATACAGGGAGAATAAAAGTCTA 777
Query 541 ATTGGGACTCCGAGGTATGCCAGCTTGAACACTCACCTAGGGATCGAGCAAAGTCGGAGA 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 778 ATTGGGACTCCGAGGTATGCCAGCTTGAACACTCACCTAGGGATTGAGCAAAGTCGGAGA 837
Query 601 GATGATATAGAATCACTTGGTTACATCCTCATGTATTTTCTCAAGGGAAGTCTCCCATGG 660
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 838 GATGATATAGAATCGCTTGGTTACATCCTCATGTATTTCCTCAAGGGAAGTCTCCCTTGG 897
Query 661 CA-GGGACTGAAAGCTGGGAACAAGAAACAGAAATATGATAAGATCAGTGAAAAGAAGGT 719
|| ||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 898 CAAGGG-CTGAAAGCTGGAAACAAGAAACAGAAGTATGATAAGATCAGCGAAAAGAAGGT 956
Query 720 TTCTACTTCCATCGAAACGTTATGCAGAGGTCATCCAACAGAGTTTGCATCCTACTTCCA 779
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 TTCAACTTCCATCGAAACGTTATGCAGAGGTCATCCAACAGAGTTTGCATCTTACTTCCA 1016
Query 780 TTACTGCCGCTCACTAAGGTTTGATGATAAGCCAGACTATGCATATTTGAAGAGACTATT 839
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTACTGCCGCTCACTTAGGTTTGATGATAAGCCAGACTATGCATATTTGAAGAGACTATT 1076
Query 840 CCGCAACCTTTTTATTCGTGAAGGTTTTCAGTTTGATTTCGTGTTTGACTGGACAGTATA 899
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1077 CCGCAACCTTTTTATCCGGGAAGGTTTTCAGTTTGATTTTGTGTTTGACTGGACAGTATA 1136
Query 900 CAAGTATCAGCAATCACAATCTGGAAACTCTCAACCTCGTCCCCATGATGGTGGTGTTGG 959
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1137 CAAGTATCAGCAATCACAATCTGGAAACCCTCAACCTCGTCCCCATGATGGTGGTGTTGG 1196
Query 960 AACTAGTTCTGGATTAAACCCTGCGGTCGGCAATTCTGAGAAGCTTCCAGATGTCCCAAA 1019
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1197 AACTAGTTCTGGATTAAACCCTGCGGTTGGCAATTCTGAGAAGCGTCCAGATGTCCCAAA 1256
Query 1020 TCAGAGAACAAATCCGGATTTTACCATGAAGCAGAAAGACAAGAATGTAAATGAATCTGC 1079
|||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |||||
Sbjct 1257 TCAGAGGACAAATCCGGATTTTACCCTGAAGCAGAAAGACAAGAATGGAAATGATTCTGC 1316
Query 1080 AATTGCAAAGGATAAGCTGCTACCTGGATCCTTGAACTTGGGTCGATCAGAAGGATCATC 1139
|||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1317 AATTGCAAAGGACAAGCTGCTACCTGGATCTTTGAACTTGGGCCGATCAGAGGGATCATC 1376
Query 1140 ATCAAGACGAGTTGTGGACACAAGCAGTCGTGAACCATTCAGTGGCGGGAGTGACAATGC 1199
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1377 GTCAAGACGAGTTGTGGACACGAGCAGTCGTGAACCATTTAGTGGCGGGAGTGACAATGC 1436
Query 1200 AAACTATGAAACCGCACTCAAAGGCATTGATGGCTTACGGATCAATAACAATGCAGGTGA 1259
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1437 AAACTATGAAACCGCACTCAAAGGCATTGATGGTTTACGGATCAATAACAATGCAGGCGA 1496
Query 1260 TGAGACAGCAGCAACGCCACACTTAAATGGAGACGATGTAGAACCC-AAAGCAAAGCTCT 1318
||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct 1497 TGAGACAGCAGCAACGCCACAATCAAATGGAGACGATGTAGAACCCCAAAGCAAAGCTCT 1556
Query 1319 CTGATTGATTCATACAA-GAAGCTATAAA 1346
|||| |||||||||||| | |||||||||
Sbjct 1557 CTGACTGATTCATACAAAGCAGCTATAAA 1585
> AT4G08800.1 | Symbols: | Protein kinase superfamily protein
| chr4:5614134-5615919 FORWARD LENGTH=858
Length=858
Score = 676 bits (366), Expect = 0.0
Identities = 543/624 (87%), Gaps = 29/624 (5%)
Strand=Plus/Plus
Query 319 TTTAGCTTGAAGACTGTTCTTATGCTTGCTGATCAAATGATAAATCGTCTCGAGTTCATT 378
||||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||||| ||
Sbjct 220 TTTAGTTTGAAGACAGTTCTCATGCTAGCTGATCAAATGATTAATCGGCTCGAGTTTATC 279
Query 379 CATTCTAAGTCGTATCTTCATCGTGATATAAAGCCGGATAATTTTCTCATGGGTTTAGGG 438
||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 280 CATTCTAAGTCGTTTCTTCATCGCGATATAAAGCCGGATAATTTTCTTATGGG--TA--- 334
Query 439 AGGCGTGCAAATCAGGTCTACATCATAGACTATGGCTTGGCTAAGAAATATAGAGACAGC 498
| | || | || | | ||| ||||| ||||||||||| |||||||||||| |||
Sbjct 335 A---G-GC---T--GG-C-AAATC--AGACTTTGGCTTGGCTAGGAAATATAGAGATAGC 381
Query 499 TCAA-CTCATCGACATATCCCATACAGGGAGAATAAAAGTCTAATTGGGACTCCGAG-GT 556
|||| || | |||||||| ||||| ||||||||||||||||||| |||||||||| | ||
Sbjct 382 TCAAGCT-ACCGACATATTCCATATAGGGAGAATAAAAGTCTAACTGGGACTCCG-GCGT 439
Query 557 ATGCCAGCTTGAACACTCACCTAGGGATCGAGCAAAGTCGGAGAGATGATATAGAATCAC 616
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 440 ATGCCAGCTTGAACACTCACCTAGGGATCGAGCAAAGTCGGAGGGATGATGTAGAATCAC 499
Query 617 TTGGTTACATCCTCATGTATTTTCTCAAGGGAAGTCTCCCATGGCAGGGACTGAAAGCTG 676
||||||| ||||||||||| || ||||| ||||||||||||||| ||||||| |||||||
Sbjct 500 TTGGTTATATCCTCATGTACTTCCTCAAAGGAAGTCTCCCATGGAAGGGACTAAAAGCTG 559
Query 677 GGAACAAGAAACAGAAATATGATAAGATCAGTGAAAAGAAGGTTTCTACTTCCATCGAAA 736
|||| ||||||||||||||||| ||||| || || ||||||||||| |||||||||||||
Sbjct 560 GGAATAAGAAACAGAAATATGACAAGATTAGCGAGAAGAAGGTTTCAACTTCCATCGAAA 619
Query 737 CGTTATGCAGA-GGTCATCCAACAGAGTTTGCATCCTACTTCCATTACTGCCGCTCACTA 795
||||||| || |||||||||| |||||||||| ||||| |||||||||||||||| ||
Sbjct 620 CGTTATGT-GAAGGTCATCCAATAGAGTTTGCAACCTACATCCATTACTGCCGCTCGCTT 678
Query 796 AGGTTTGATGATAAGCCAGACTATGCATATTTGAAGAGACTATTCCGCAACCTTTTTATT 855
||||| |||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 679 AGGTTCGATGATAAGCCAGACTATGCCTATTTGAAGAGACTGTTCCGCGACCTTTTTATT 738
Query 856 CGTGAAGGTTTTCAGTTTGATTTCGTGTTTGACTGGACAGTAT-ACAAG-TATCAGCAAT 913
||||||||||||||||||||||| |||||||||||||| || | | ||| | | |||||
Sbjct 739 CGTGAAGGTTTTCAGTTTGATTTTGTGTTTGACTGGACGGTGTTA-AAGCTGCCCGCAAT 797
Query 914 CACAAT-CTGGAAACTCTCAACCT 936
|||||| | | |||| ||| ||||
Sbjct 798 CACAATGCCG-AAACCCTCCACCT 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5