BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931454
Length=376
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19440.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 501 2e-141
AT1G64760.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 333 7e-91
> AT2G19440.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr2:8418164-8419806 REVERSE LENGTH=1437
Length=1437
Score = 501 bits (271), Expect = 2e-141
Identities = 299/313 (96%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 24 ATGAATCTGTTGGCCATCGTCGTTGGATTTGGAATCATGGGTATTGTTGTGGTTGATGGG 83
||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1 ATGAATCTGTTGGCCTTCGTCGTTGGATTTGGAATCATGGGTATTGTTATGGTAGATGGG 60
Query 84 CTAGGTGTGTACTGGGGAACAATGGCTACACATAAGCTACCACCAAAGACAGTGGTTCAA 143
|||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 61 CTAGGTGTCAACTGGGGAACAATGGCTACACATAAGCTTCCACCAAAGAAAGTGGTTCAA 120
Query 144 ATGCTTAAGGACAATAACATCAACAAAGTTAAGCTTTTTGATGCGGATGAGACCACAATG 203
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 121 ATGCTTAAGGACAATAACATTAACAAAGTTAAGCTTTTTGATGCGGATGAGACCACTATG 180
Query 204 AGTGCACTTGCTGGCTCTGGTCTTGAAGTTATGGTTGCTATTCCTAATGATCAGCTTAAG 263
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTGCACTTTCTGGCTCTGGTCTTGAAGTTATGGTTGCTATTCCTAATGATCAGCTTAAG 240
Query 264 GTCATGGGAAGTTATGACCGAGCTAAGGATTGGGCTCTTAAGAATGTCACTCGTTATAAC 323
|| ||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 241 GTTATGGGAAGTTATGACCGAGCTAAAGATTGGGTTCATAAGAATGTCACTCGTTATAAC 300
Query 324 TTCAATGGTGGTG 336
|||||||||||||
Sbjct 301 TTCAATGGTGGTG 313
> AT1G64760.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr1:24054173-24056414 REVERSE LENGTH=1610
Length=1610
Score = 333 bits (180), Expect = 7e-91
Identities = 276/321 (86%), Gaps = 11/321 (3%)
Strand=Plus/Plus
Query 26 GAATCTGTTGGC-CATCGTCGTTGGATTTGGAATC---ATGGGT-A-TT--G--TTGTGG 75
|||||||||||| | ||||||| ||||| | |||| || ||| | || | || |||
Sbjct 123 GAATCTGTTGGCTC-TCGTCGTCGGATTCGTAATCGTAATTGGTCATTTGGGTATTTTGG 181
Query 76 TTGATGGGCTAGGTGTGTACTGGGGAACAATGGCTACACATAAGCTACCACCAAAGACAG 135
| ||||| | |||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 182 TAAATGGGTTGGGTGTGAATTGGGGAACAATGGCTACACATAAGCTACCTCCAAAGACAG 241
Query 136 TGGTTCAAATGCTTAAGGACAATAACATCAACAAAGTTAAGCTTTTTGATGCGGATGAGA 195
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 242 TGGTTCAGATGCTTAAAGACAATAACATCAACAAAGTTAAGCTTTTTGATGCGGACGAGA 301
Query 196 CCACAATGAGTGCACTTGCTGGCTCTGGTCTTGAAGTTATGGTTGCTATTCCTAATGATC 255
| || ||| ||||||| ||||| || ||||||||||| ||||| |||||||| |||||||
Sbjct 302 CAACCATGGGTGCACTCGCTGGATCGGGTCTTGAAGTGATGGTCGCTATTCCCAATGATC 361
Query 256 AGCTTAAGGTCATGGGAAGTTATGACCGAGCTAAGGATTGGGCTCTTAAGAATGTCACTC 315
|||||||||| ||| ||||| |||||||| || ||||||| || ||||||||||||||
Sbjct 362 AGCTTAAGGTTATGACTAGTTACGACCGAGCCAAAGATTGGGTTCGTAAGAATGTCACTC 421
Query 316 GTTATAACTTCAATGGTGGTG 336
||||||||||| |||||||||
Sbjct 422 GTTATAACTTCGATGGTGGTG 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17694247648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5