BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931466

Length=278
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19320.1 | Symbols:  | unknown protein; Has 9 Blast hits to ...   316    5e-86


> AT2G19320.1 | Symbols:  | unknown protein; Has 9 Blast hits to 
9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr2:8370691-8371108 REVERSE LENGTH=418
Length=418

 Score =  316 bits (171),  Expect = 5e-86
 Identities = 227/254 (89%), Gaps = 3/254 (1%)
 Strand=Plus/Plus

Query  15   gagagaaatggaggcaacgaaagaaagaatggaaaaagaagagaagaagatagaCCTCAC  74
            |||||| ||||||||||||||||| |||||||| |||||  |||| |||| || | ||||
Sbjct  5    GAGAGATATGGAGGCAACGAAAGAGAGAATGGAGAAAGACCAGAAAAAGAGAGTCGTCAC  64

Query  75   CAATGAGGCCGGAAAAGCCGAAGACAACACGACGGTGAGAGCCATTGTTCGTGAGTCTAT  134
            ||| ||||| ||||||||||||||||||||||   | ||| ||||  ||||||| |||||
Sbjct  65   CAACGAGGCGGGAAAAGCCGAAGACAACACGA---TAAGAACCATCATTCGTGAATCTAT  121

Query  135  AGTGGAAGACAGAGGTTCCAACGACGGTGACGGCGACAAAGACAACGACCATGACGCTCG  194
            |||||||||||||||||||||||||| ||| ||| |||||||||||||||||| |||| |
Sbjct  122  AGTGGAAGACAGAGGTTCCAACGACGATGATGGCAACAAAGACAACGACCATGGCGCTAG  181

Query  195  CAAGCCAGAGGACATTCTTGCTTTCTCAAGAACCGTACGGAAGATCGATTCATCCCTCGA  254
            ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct  182  CAAGCCAGAGGACATTCTTGCTTTCTCAAGAACCGTACGAAAGATCGATTCGTCCCTCGA  241

Query  255  GTAGTATTTAATGT  268
            |||||| |||||||
Sbjct  242  GTAGTAGTTAATGT  255



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12768008246


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5