BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931476

Length=908
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19200.1 | Symbols:  | unknown protein | chr2:8333200-833473...   392    3e-108


> AT2G19200.1 | Symbols:  | unknown protein | chr2:8333200-8334730 
FORWARD LENGTH=1220
Length=1220

 Score =  392 bits (212),  Expect = 3e-108
 Identities = 340/398 (85%), Gaps = 24/398 (6%)
 Strand=Plus/Plus

Query  117  TTCGTTTACGCCA-ATGATCATCCGCACAATCCTCGTCGTTTAATAGTCCTCCTTTATGC  175
            ||||||| ||||| | ||||||| |||||||||||||||| | | ||||||||| |||||
Sbjct  298  TTCGTTTTCGCCAGA-GATCATCTGCACAATCCTCGTCGTGTCAGAGTCCTCCTCTATGC  356

Query  176  TAAGTTGGGCCTTCATCGTTACAATTGTGTCCATGGGAAAGACTTGAAGCTCAGTAGCAT  235
            ||||| ||| |||||||||||||||| |||| | ||||||||||||||| ||||||||||
Sbjct  357  TAAGTCGGG-CTTCATCGTTACAATTTTGTCAAGGGGAAAGACTTGAAGGTCAGTAGCAT  415

Query  236  ATCTACATACATCAAGTCCTCGGGTGTTACTAGTGCTACCTCTTACCGCATAACTTTCGA  295
            |||||||||| ||| |||| |        |  | |        |||||||||||||||||
Sbjct  416  ATCTACATACTTCACGTCC-C--------C-CG-G--------TACCGCATAACTTTCGA  456

Query  296  TGCCAAGGATCCTCGAGATACCAGTGGTTCCCTTCAAACTTTTCAAACTCATGTTAATGA  355
            |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct  457  TGCCAAGGATCCTCGAGAGACCAGTGGTTCCCTTCAAACTTTTCATACTCATGTTAATGA  516

Query  356  AAGAACTTATGGCAGCTTACTTTTGTCGTGCACTATTGCTTGTCCTTTAGGTGAAG-TTA  414
            ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||  || 
Sbjct  517  AAGAAGTTATGGCAGCTTCCTTTTGACGTGCACTATTGCTTGTCCTTTAGGTGAACCTTT  576

Query  415  CCATAGGTAGTGAAACCAAAAGAGTCAACTTGCATTCTCTCAGGCCTGAGTTGCCGCCAG  474
              | |||| ||||||||||||||  ||  |||  ||||||||  ||||||||||||| ||
Sbjct  577  T-AGAGGTGGTGAAACCAAAAGAACCATGTTGGTTTCTCTCATACCTGAGTTGCCGCTAG  635

Query  475  AGAATCCTTTCCAAGATGATACAGACCGATTTTACGTG  512
            |||||||||||||||||| |||||||||||||||||||
Sbjct  636  AGAATCCTTTCCAAGATGCTACAGACCGATTTTACGTG  673


 Score =  217 bits (117),  Expect = 2e-55
 Identities = 160/180 (89%), Gaps = 6/180 (3%)
 Strand=Plus/Plus

Query  683  CGCCTATGATGCAATTTTCTACATTAGGTACACAGACTCATGCAAGGCTC-GAGCTGGTG  741
            ||||| |||||||| ||||||| |||||||||||||||||||| |||||| || ||||||
Sbjct  760  CGCCTGTGATGCAACTTTCTACGTTAGGTACACAGACTCATGCCAGGCTCGGA-CTGGTG  818

Query  742  AGGATGGCGATCGCGTTGCTATAGTCAGAAGAATCTGGGATGAGAAGCC-GCAAGTCTTT  800
            |||||| ||||||||||||||||||||||||||||||||||||| ||   | | ||||| 
Sbjct  819  AGGATGCCGATCGCGTTGCTATAGTCAGAAGAATCTGGGATGAGCAGTTTG-ATGTCTTC  877

Query  801  AGAATCGTGGGTCGCACTGAGAGCT-TCAGATCGTTAGGGAACGGTGAATCCACCACGTC  859
            | |||||||||||| |||||||||| | ||||| |||||||| |||||||||||||||||
Sbjct  878  AAAATCGTGGGTCGTACTGAGAGCTAT-AGATCATTAGGGAATGGTGAATCCACCACGTC  936



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44356751801


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5