BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931483
Length=373
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16580.1 | Symbols: | SAUR-like auxin-responsive protein fa... 569 5e-162
AT4G34760.1 | Symbols: | SAUR-like auxin-responsive protein fa... 335 2e-91
> AT2G16580.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr2:7184422-7186968 REVERSE LENGTH=893
Length=893
Score = 569 bits (308), Expect = 5e-162
Identities = 351/371 (95%), Gaps = 5/371 (1%)
Strand=Plus/Plus
Query 1 AAACCCACCCAAAAACAAAAATGGCCATCCTTAAGAAATCTACAAAACTGGCTCAAACAG 60
||| ||||| ||||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct 22 AAA-CCACCAAAAAACAAAAATGTCCATTCTCAAGAAATCTACAAAACTGGCTCAAACAG 80
Query 61 CAATGCTTAGGCAGATTCTGAAGAGATGTTCAAGCTTAGGTAAGAAGAAT---GGAGGAG 117
||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct 81 CAATGCTTAGGCAGATTCTGAAGAGATGTTCAAGCTTGGGGAAGAAGAATGGAGGAGGAG 140
Query 118 GATACGAAGAAGATGATCTCCCACTTGATGTACCAAAGGGACACTTCCCTGTCTATGTAG 177
|||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 141 GATATGAAGAAGTTGATCTCCCACTTGATGTACCCAAGGGACACTTCCCTGTCTACGTAG 200
Query 178 GACACAACAGAAGCAGATACATAGTTCCTATCTCTTTCTTGTCCAATCTTGACTTCCAAT 237
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 201 GACACAACAGAAGCAGATACATAGTTCCTATCTCTTTCTTGACCAATCTTGACTTCCAAT 260
Query 238 GTCTCCTTAGAAGAGCTGAGGAAGAGTTTGGTTTTGATCATGACATGGGTCTCACCATTC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GTCTCCTTAGAAGAGCTGAGGAAGAGTTTGGTTTTGATCATGACATGGGTCTCACCATTC 320
Query 298 CTTGTGATGAACTCTTCTTTCAAGATCTGACTTCCATGATCAGATGAGATCTCAAAAGTT 357
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 321 CTTGTGATGAACTCTTCTTTCAAGATCTGACTTCCATGATCCGATGAGATCTCAACAGTT 380
Query 358 TTAAGAA-CAA 367
| || || |||
Sbjct 381 TGAATAATCAA 391
> AT4G34760.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr4:16582183-16582879 REVERSE LENGTH=697
Length=697
Score = 335 bits (181), Expect = 2e-91
Identities = 310/371 (84%), Gaps = 13/371 (4%)
Strand=Plus/Plus
Query 8 CCCAAAAACAAAAATGGCCATCCTTAAGAAATCTACAAAACTGGCTCAAACAGCAATGCT 67
||||||||| ||||||| || | |||||| || ||||||| ||||||||||||||||
Sbjct 75 CCCAAAAAC--AAATGGCTATAATGAAGAAAACTTCAAAACTCACTCAAACAGCAATGCT 132
Query 68 TAGGCAGATTCTGAAGAGATGTTCAAGCTTAGGTAAGAAGAATGGAGGAGGATACGAAGA 127
| |||||||||||||||||| || |||||||| ||||||||||||||||| ||||| ||
Sbjct 133 GAAGCAGATTCTGAAGAGATGCTCGAGCTTAGGGAAGAAGAATGGAGGAGGGTACGATGA 192
Query 128 AGA-TGATCTCCCACTTGATGTACCAAAGGGACACTTCCCTGTCTATGTAGGACACAACA 186
||| || || || ||||| ||||||||||||||||||||||||||||| ||| | ||||
Sbjct 193 AGATTG-CCTTCCGCTTGACGTACCAAAGGGACACTTCCCTGTCTATGTCGGAGAGAACA 251
Query 187 GAAGCAGATACATAGTTCCTATCTCTTTCTTGTCCA-ATCTTGACTTCCAATGTCTCCTT 245
||||||||||||| || || ||||| |||||| || ||| ||| ||||||| ||| |||
Sbjct 252 GAAGCAGATACATTGTCCCAATCTCCTTCTTG-ACACATCCTGAGTTCCAATCTCT-CTT 309
Query 246 AGAA-GAGCTGAGGAAGAGTTTGGTTTTGATCATGACATGGGTCTCACCATTCCTTGTGA 304
| || |||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||
Sbjct 310 ACAACGAGCCGAGGAAGAATTTGGATTCGATCACGACATGGGTCTCACCATTCCTTGTGA 369
Query 305 TGAACTC-TTCTTTCAAGATC-TGACTTCCATGATCAGATGAGATCTCAAAAGTTTTAAG 362
||||||| || |||||| | | | || ||||||||| ||||| || | | | ||| |||
Sbjct 370 TGAACTCGTT-TTTCAA-ACCCTAACATCCATGATCCGATGATATTTTATCA-TTTGAAG 426
Query 363 AACAAGAAGAA 373
|| ||| ||||
Sbjct 427 AAGAAGCAGAA 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17543444401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5