BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931485
Length=286
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16592.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 370 4e-102
AT2G16594.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 257 3e-68
> AT2G16592.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:7196176-7196721
FORWARD LENGTH=546
Length=546
Score = 370 bits (200), Expect = 4e-102
Identities = 226/238 (95%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 48 CTACCATTTTGCGATGTGGAGCTTCTACCTTGCGTCCTACCTTTTCAAGTTCGCGGTCAC 107
|||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 186 CTACCATTTTGCAATGTGGAGCTTCTACCTTGCGTCCTACCTTTTAAAGTTCGTGGTCAC 245
Query 108 GGAAGCAAACAACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATG 167
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GGAAGC--A-AACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATG 302
Query 168 TGTAGATTCCTAGCGGCCAAGGATCGTAACCTGAACGCAGCTGCTCATAGAATATTCTGG 227
|||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 303 TGTAGATTCCTAATGGCCAAGGAACGTGACCTGAACGCAGCTGCTCATAGAATATTCTGG 362
Query 228 TTTTGCCAAATTTCCGTCCCTAATTGTCAAAAAATCTAGAGATATAGGTTATGGTTTT 285
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 363 TTTTGCAAAATTTCCGTCCCTAATTGTCCAAAAATCTAGAGATATAGGTTATGGTTTT 420
Score = 78.7 bits (42), Expect = 3e-14
Identities = 51/55 (93%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 2 AGTTACTAATGCATCAGA-CATGAAGACCATTCCATTGATATTCATC-CTACCAT 54
|||||||||| ||||||| |||||||||||||||||||||||||||| | |||||
Sbjct 76 AGTTACTAATTCATCAGATCATGAAGACCATTCCATTGATATTCATCGCCACCAT 130
> AT2G16594.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:7197774-7198082
FORWARD LENGTH=309
Length=309
Score = 257 bits (139), Expect = 3e-68
Identities = 195/221 (88%), Gaps = 7/221 (3%)
Strand=Plus/Plus
Query 48 CTACCATTTTGCGATGTGGAGCTTCTACCTTGCGTCCTACCTTTTCAAGTTCGCGGTCAC 107
|||||||||||| || |||| |||||| ||||||||| |||||||| |||| |||||||
Sbjct 94 CTACCATTTTGCAATCTGGATCTTCTAGCTTGCGTCCAACCTTTTCTAGTTAACGGTCAC 153
Query 108 GGAAGCAAACAACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATG 167
||| || | |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 154 GGAGGC--A-AACTGCCTAAAGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGCATG 210
Query 168 TGTAGATTCCT-AGCGGCCAAGGATC-GTAACCTGAACGCAGCTGCTCATAGAATATTCT 225
||||||||||| | |||||||||| | | || || |||||||||||||||||||||||||
Sbjct 211 TGTAGATTCCTTA-CGGCCAAGGAACAG-AATCTAAACGCAGCTGCTCATAGAATATTCT 268
Query 226 GGTTTTGCCAAATTTCCGTCCCTAATTGTCAAAAAATCTAG 266
|||||||||| ||||| ||||| ||||||| |||||| |||
Sbjct 269 GGTTTTGCCATATTTCTGTCCCCAATTGTCCAAAAATATAG 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13170150238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5