BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931486
Length=346
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16594.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 418 2e-116
AT2G16592.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 401 2e-111
> AT2G16594.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:7197774-7198082
FORWARD LENGTH=309
Length=309
Score = 418 bits (226), Expect = 2e-116
Identities = 282/309 (91%), Gaps = 3/309 (1%)
Strand=Plus/Plus
Query 21 ATGAAGATCATTTCATGGATACTTATCGCCATCATC---ATGATCTTGGCATCATTTCCT 77
|||||||||| | |||||||||| || ||||||||| |||||||| ||||||||||||
Sbjct 1 ATGAAGATCAGTCCATGGATACTCATAGCCATCATCATGATGATCTTAGCATCATTTCCT 60
Query 78 GCTCCGATCAAAGTCGTTGGTGCCAAAAAAGAGCTACCATTTTGCAATTTGGAGCTTCTA 137
|||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct 61 TCTCCGATCAAAGTCGTTGGTGCAAAAAAAGAGCTACCATTTTGCAATCTGGATCTTCTA 120
Query 138 CCTTGCGTTGAACCCTTTCTTGTTAACGGTCGTGGAGGCAAATTGCCTAAAGGCTGTTGT 197
||||||| |||| ||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 121 GCTTGCGTCCAACCTTTTCTAGTTAACGGTCACGGAGGCAAACTGCCTAAAGGCTGTTGT 180
Query 198 GAGAAAATGAAAAAGTCAACATCATGTATGTGTAGATTTCTTACGGCCAAGGAACATAAC 257
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 181 GAGAAAATGAAAAAGTCAACATCATGCATGTGTAGATTCCTTACGGCCAAGGAACAGAAT 240
Query 258 CTAAACGCAGCTGCTCATAGAATATTCTGGTTTTGCCATATTTCCGTCCCTAATTGTCCA 317
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 241 CTAAACGCAGCTGCTCATAGAATATTCTGGTTTTGCCATATTTCTGTCCCCAATTGTCCA 300
Query 318 AAAATCTAG 326
||||| |||
Sbjct 301 AAAATATAG 309
> AT2G16592.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:7196176-7196721
FORWARD LENGTH=546
Length=546
Score = 401 bits (217), Expect = 2e-111
Identities = 302/343 (88%), Gaps = 6/343 (2%)
Strand=Plus/Plus
Query 2 AGTTACTAATTCGTTAGA-CATGAAGATCATTTCATGGATACTT-ATCGCCATCATCATG 59
|||||||||||| | ||| |||||||| |||| ||| |||| || ||||||| ||||||
Sbjct 76 AGTTACTAATTCATCAGATCATGAAGACCATTCCATTGATA-TTCATCGCCACCATCATA 134
Query 60 ATCTTGGCATCATTTCCTGCTC-CGATCAAAGTCGTTGGTGCCAAAAAAGAGCTACCATT 118
|||||| |||||||||| || | ||||||||||||| |||||||||||||| ||||||||
Sbjct 135 ATCTTGACATCATTTCCAGC-CACGATCAAAGTCGTCGGTGCCAAAAAAGATCTACCATT 193
Query 119 TTGCAATTTGGAGCTTCTACCTTGCGTTGAACCCTTTCTTGTTAACGGTCGTGGAGGCAA 178
||||||| ||||||||||||||||||| ||| ||| ||| |||| ||| ||||
Sbjct 194 TTGCAATGTGGAGCTTCTACCTTGCGTCCTACCTTTTAAAGTTCGTGGTCACGGAAGCAA 253
Query 179 ATTGCCTAAAGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATGTGTAGATTTCT 238
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 254 ACTGCCTAATGGCTGTTGTGAGAAAATGAAAAAGTCAACATCATGTATGTGTAGATTCCT 313
Query 239 TACGGCCAAGGAACATAACCTAAACGCAGCTGCTCATAGAATATTCTGGTTTTGCCATAT 298
| ||||||||||| | |||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 314 AATGGCCAAGGAACGTGACCTGAACGCAGCTGCTCATAGAATATTCTGGTTTTGCAAAAT 373
Query 299 TTCCGTCCCTAATTGTCCAAAAATCTAGAGATTATAGGTTATG 341
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct 374 TTCCGTCCCTAATTGTCCAAAAATCTAGAGAT-ATAGGTTATG 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16186215178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5