BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931489
Length=562
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16600.1 | Symbols: ROC3 | rotamase CYP 3 | chr2:7200807-720... 843 0.0
AT4G34870.1 | Symbols: ROC5, ATCYP1 | rotamase cyclophilin 5 | ... 387 8e-107
> AT2G16600.1 | Symbols: ROC3 | rotamase CYP 3 | chr2:7200807-7201574
FORWARD LENGTH=768
Length=768
Score = 843 bits (456), Expect = 0.0
Identities = 526/559 (94%), Gaps = 8/559 (1%)
Strand=Plus/Plus
Query 1 TCAATCTCAGA-AAACAAA-AAATGGCACCAAACCCTAAAGTTTACTTCGACATGGCCGT 58
||||||||||| ||| ||| |||||||| ||||||||||||| |||||||||||| ||||
Sbjct 34 TCAATCTCAGAGAAAAAAAGAAATGGCAACAAACCCTAAAGTCTACTTCGACATGACCGT 93
Query 59 CGGTGGTC-AATCAGCTGGTCGTATCGTGATGGAGCTTTTCGCGGACACAACACCAGAAA 117
|||||| | |||| || |||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 94 CGGTGG-CAAATCCGCCGGTCGTATCGTGATGGAGCTTTACGCCGACACAACACCAGAAA 152
Query 118 CCGCCGAGAATTTCAGAGCTCTCTGTACCGGAGAGAAAGGAATCGGAAAATC-TGGTAAG 176
||||||||||||||||||| |||||||||||||||| ||||||||| ||| | ||||||
Sbjct 153 CCGCCGAGAATTTCAGAGCACTCTGTACCGGAGAGAGAGGAATCGGTAAA-CAAGGTAAG 211
Query 177 CCATTACACTACAAAGGGTCAAGCTTTCACCGTGTGATTCCGAAATTCATGTGTCAAGGA 236
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 212 CCATTACACTACAAAGGATCAAGCTTTCACCGAGTGATTCCGAAATTCATGTGTCAAGGA 271
Query 237 GGTGATTTCACCGCCGGGAATGGTACCGGAGGTGAATCTATCTATGGACT-GAAGTTCAA 295
||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 272 GGTGATTTCACAGCCGGGAATGGTACCGGAGGTGAATCTATCTATGGA-TCGAAGTTCAA 330
Query 296 AGATGAGAACTTTGTCAAGAAACATACAGGACCAGGTATTTTGTCTATGGCTAACGCTGG 355
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 AGACGAGAACTTTATCAAGAAACATACAGGACCAGGTATTTTGTCTATGGCTAACGCTGG 390
Query 356 TGCCAACACTAATGGATCTCAGTTTTTTATTTGTACTGAGAAGACTTCATGGCTCGATGG 415
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 391 TGCGAACACGAATGGATCTCAGTTTTTTATTTGTACTGAGAAGACTTCGTGGCTCGATGG 450
Query 416 GAAACATGTTGTGTTTGGTCAAGTTGTTGAAGGATTGAATGTTGTTAGAGATATTGAAAA 475
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 451 GAAACATGTTGTGTTTGGTCAAGTTGTTGAGGGATTGAATGTTGTTAGAGATATTGAGAA 510
Query 476 GGTTGGATCTGACTCTGGAAGAACTTCTAAGCCTGTTGTTATTGTTGATTGTGGTCAGAT 535
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 511 GGTTGGATCTGACTCTGGAAGAACTTCTAAGCCTGTTGTCATTGCTGATTGTGGTCAGAT 570
Query 536 TTCTTAGATCTCTCTgaga 554
||||||||||| |||||||
Sbjct 571 TTCTTAGATCTGTCTGAGA 589
> AT4G34870.1 | Symbols: ROC5, ATCYP1 | rotamase cyclophilin 5
| chr4:16614327-16615313 FORWARD LENGTH=987
Length=987
Score = 387 bits (209), Expect = 8e-107
Identities = 438/546 (80%), Gaps = 26/546 (5%)
Strand=Plus/Plus
Query 30 AACCCTAAAGTTTACTTCGACATG-GCCGTCGGTGGTCAAT--CAGCTGGTCGTATCGTG 86
||||||| ||||| |||||||||| | | || | ||| | | || | || || |||| |
Sbjct 131 AACCCTAGAGTTTTCTTCGACATGAGTC-TCAGCGGT-ACTCCCATC-GGACGGATCGAG 187
Query 87 ATGGAGCTTTTCGCGGACACAACACCAGAA-ACCGCCGAGAATTTCAGAGCTCTCTGTAC 145
|||||||||||||| || ||||| ||| || || || ||||||||| | |||||||||||
Sbjct 188 ATGGAGCTTTTCGCTGATACAACCCCA-AACACGGCGGAGAATTTCCGTGCTCTCTGTAC 246
Query 146 CGGAGAGAAAGGAATCGGAAAATCT-GGTAAGCCA-TTACACTACAAAGGGTCAAGCTTT 203
||| ||||||||||| || ||| || ||||||||| || |||| |||||| || | |||
Sbjct 247 CGGCGAGAAAGGAAT-GGGAAAGCTAGGTAAGCCACTT-CACTTCAAAGGATCGATCTTC 304
Query 204 CACCGTGTGATT-CCGAAATTCATGTGTCAAGGAGGTGATTTCACCGCCGGGAATGGTAC 262
|||||||||||| ||| ||||||||||||||||||||||||||||||| ||| || ||
Sbjct 305 CACCGTGTGATTCCCG-GATTCATGTGTCAAGGAGGTGATTTCACCGCCAAGAACGGAAC 363
Query 263 CGGAGGTGAATCTATCTATGGA-CTGAAGTTCAAAGATGAGAACTTTGTCAAGAAACATA 321
||| |||||||| ||||| || || |||||||| || ||||||||| ||||||| ||||
Sbjct 364 CGGTGGTGAATCGATCTACGGTGCT-AAGTTCAAGGACGAGAACTTTATCAAGAAGCATA 422
Query 322 CAGGACCAGGTATTTTGTCTATGGCTAACGCTGGTGCC-AACACTAATGGATCTCAGTTT 380
||||| | || ||| | || ||||||||| ||||| || |||||||| |||||||||||
Sbjct 423 CAGGAGCTGGGATTCTCTCAATGGCTAACTCTGGT-CCTAACACTAACGGATCTCAGTTC 481
Query 381 TTTATTTGTACTGAGAAGACTTCATGGCTCGATGGGAAACATGTTGTGTTTGGTCAAGTT 440
|| || ||||| || ||||| || ||| | ||||| || || ||||||||||| ||||||
Sbjct 482 TTCATCTGTACCGATAAGACGTCGTGGTTAGATGGTAAGCACGTTGTGTTTGGACAAGTT 541
Query 441 GTTGAAGGATTGAATGTTGTTAGAGAT-ATTGA-AAAGGTTGGATCTGACTCTGGAA-GA 497
||| |||| ||| | || || | || ||||| |||| |||||||||| ||||||| ||
Sbjct 542 GTTAAAGGCTTGGACGTCGTGA-AGGCGATTGAGAAAG-TTGGATCTGATTCTGGAAAGA 599
Query 498 ACTTCTAA-GCCTGTTGTTATTGTTGATTGTGGTCAGATTTCTTAGATCTCTCTgagaga 556
|||| || | | ||| || ||||||||||||| |||||||||||| ||||| |
Sbjct 600 -CTTCCAAAGTC-GTTACCATCACTGATTGTGGTCAGCTTTCTTAGATCTGAGTGAGAAA 657
Query 557 gagaga 562
| ||||
Sbjct 658 GTGAGA 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26975736939
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5