BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931491
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16630.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 915 0.0
> AT2G16630.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr2:7209239-7211037 FORWARD LENGTH=1292
Length=1292
Score = 915 bits (495), Expect = 0.0
Identities = 564/596 (95%), Gaps = 10/596 (2%)
Strand=Plus/Plus
Query 1 CTTATAGCTTCTGAGCATCAATGGATCCACATCATAATAATC-T-TC-TCTTTGTAGCCT 57
||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||
Sbjct 28 CTTATAGCTTCTGAGCATCAATGGATCCAAATCATAATAATCTTCTCATCTTTGTAGCCT 87
Query 58 TTTTTGTTCTCTGCTTAGCC-GCAAGTGGAGTAACCGGATATGCCACGGTCACAGGCTCG 116
|||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 88 TTTTTGTTCTCTGCTTAGCCACCAA-TGGTGTAACCGGATATGCCACGGTCACAGGCTCG 146
Query 117 GTGTTTTGTGACCAATGCAAGGATGGAGAGAGATCTTTGTTTGATTTTCCTGTCTCTGGA 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 GTGTTTTGTGACCAATGCAAGGATGGAGAGAGATCTTTGTTTGATTTTCCTGTCTCTGGA 206
Query 177 ATCAAGGTTAGTGTCACATGTTCTGATGAAAATGGAGAGGTCTATATGTCAAGAGAAGAG 236
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 207 ATCAAGATTAGTGTCACATGTGCTGATGAAAATGGACAGGTCTATATGTCAAGAGAAGAG 266
Query 237 ACTACTAATTGGCTTGGAGGTTATGTAATGAGATTTGATGGTACACCGGATCTGAGTAAC 296
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 267 ACTACTAATTGGCTTGGAGGATATGTAATGAGATTTGATGGGACACCGGATCTAAGTAAC 326
Query 297 TGTTATGCTCAAGTTTCAGATAATGGAGTTCAACAAGACCCAAGTAGTTGCAGCATTGCT 356
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 327 TGTTATGCTCAAGTTTCAGACAATGGAGTTCAACAAGACCCAAGTAGCTGCAGCATTGCT 386
Query 357 TCAGGTCCTGCACAGAAACTTAAACTAATGTTCAGCTTTTTTGGGATTGAAACGTTTGCT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TCAGGTCCTGCACAGAAACTTAAACTAATGTTCAGCTTTTTTGGGATTGAAACGTTTGCT 446
Query 417 GCGGATGCGCTTCTTGCTCAGCCACTTCAGCCAATGT-CTTTTTGTCCTAAACCACCCGC 475
|||||||| ||||||||||| ||| ||||||||| || |||||||||||||||||||| |
Sbjct 447 GCGGATGCCCTTCTTGCTCAACCAGTTCAGCCAA-GTTCTTTTTGTCCTAAACCACCCAC 505
Query 476 AGCACCGGTCATGcctcctcctcaagtcccggtcatgcctcctcctcaggtcccggttaa 535
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 506 AGCTCCGGTCATGCCTCCTCCTCAAGTTCCGGTAATGCCTCCTCCTCAGGTCCCGGTTAA 565
Query 536 gcctcctcctaaggtccCGGTTATAAGTCCT---CCTCCAGTTACATCACCTCCTC 588
||||| ||||||||||||||||||||||||| ||||||| ||||| |||||||
Sbjct 566 GCCTCATCCTAAGGTCCCGGTTATAAGTCCTGATCCTCCAGCTACATTGCCTCCTC 621
Score = 671 bits (363), Expect = 0.0
Identities = 442/479 (92%), Gaps = 9/479 (2%)
Strand=Plus/Plus
Query 536 gcctcctcctaaggtccCGGTTATAAGTCCTCCTCCAGTTACATCACCTCCTCAGTTTAA 595
|||||||||| ||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 662 GCCTCCTCCTCTGGTCCCGGTCATAAATCTTCCTCCAGTTACATCACCTCCTCAGTTTAA 721
Query 596 GCTTCCACC--T---T----TCCCTCCAATGCCATTTGTAGAGCCATCAGCTTGTTCTCA 646
||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GCTTCCACCATTGCCTCAAATCCCTCCAATGCCATTTGTAGAGCCATCAGCTTGTTCTCA 781
Query 647 CCAGTTGTGGATGAAACCTGAGTACAGATGTTACTGGAGGGCGATAGGTCCAGACACGAA 706
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 782 CCAGTTGTGGATGAAACCTGAGTACAGATGCTACTGGAGGGCGATAGGTCCAGACACAAA 841
Query 707 GGTTGCGGTTGCATTTGGGCTAGTAGCCGGGAGGAGGTACGGCACTGATATGACCGTACG 766
||| || |||||||||||||||||||||||||| | |||||||| |||||||| |||||
Sbjct 842 GGTCGCAGTTGCATTTGGGCTAGTAGCCGGGAGAATATACGGCACAGATATGACAGTACG 901
Query 767 TGAAGCGCTTGACGGGCGAGGAGAAGCCTATAAGACACTCCTAAGAGAGGCAACAACTGC 826
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 902 AGAAGCGCTTGACGGGCGAGGAGAAGCCTATAAGACACTTCTAAGAGAGGCAACAACTGC 961
Query 827 ATTACTCAATTCATACAACTCTCTAGGATTTCCATATAATTCCATCGCTGTGATCACATA 886
||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 962 ATTGCTCAATTCATACAACTCTCTAGGATTTCCTTATAATTCCGTCGCTGTGATCACATA 1021
Query 887 TACCAATTTGGCTCTCCTCGGGAATTCGGAACATGATGTTCTCATGACCGCTATTCGTTT 946
||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1022 TACCAATCTGGCTCTCCTCGGGAATTCGGAACACGATGTCCTCATGACTGCTATTCGTTT 1081
Query 947 CATTAAGGCTAATTCCGGGACCTGCAGATTCACAGTATGTAATTGATTGGTTGTGTTTT 1005
||| |||||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 1082 CATCAAGGCTAATTCCGGGACCTGCAGATTCACAGTCTGCAATTGATTGAATGTGTTTT 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49581103089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5