BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931513
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16770.1 | Symbols: bZIP23 | Basic-leucine zipper (bZIP) tra... 1208 0.0
> AT2G16770.1 | Symbols: bZIP23 | Basic-leucine zipper (bZIP) transcription
factor family protein | chr2:7279431-7281157 FORWARD
LENGTH=1424
Length=1424
Score = 1208 bits (654), Expect = 0.0
Identities = 757/804 (94%), Gaps = 18/804 (2%)
Strand=Plus/Plus
Query 5 TACTGGGTTTTTAGTAATGGACGACGGTGAGCTTGAGTTTTCGAATTCGAACATGGGTGG 64
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 319 TACTGGGTTTTGAGTAATGGACGACGGTGAGCTTGAGTTTTCGAATTCAAACATGGGTGG 378
Query 65 TGAGTTACCACCTAGTAGCTGTTCGATGGATTCGTTCTTCGATGAGCTTTTGAGGGATTC 124
||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 379 TGAATT---ACC---TAGCTGTTCGATGGATTCGTTCTTCGATGAGCTTTTGAGAGATTC 432
Query 125 TGGTGCTTGTACTCATACTCATACTTGTAATCCTCCGGGACCAGAGAACACACATACTCA 184
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 433 TCATGCTTGTACTCATACTCACACTTGTAATCCTCCGGGACCAGAGAACACACATACTCA 492
Query 185 CACATGTCTCCATGTGCACACCAAGATTCTTCCTTCACAGAGCGAGGATAAAGTTTCTAC 244
||||||||||||||||||||||||||||||||| | || | |||||||||||
Sbjct 493 CACATGTCTCCATGTGCACACCAAGATTCTTCC-T----GA-C------AAAGTTTCTAC 540
Query 245 CGATGATACATCGGAATCTTCAGGGAAGAAGAGACCTTTGGGGAACAGAGAAGCGGTTAG 304
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 541 TGATGATACATCGGAATCTTCAGGGAAGAAGAGACCTTTAGGGAATAGAGAAGCGGTTAG 600
Query 305 GAAGTATAGGGAGAAGAAGAAGGCTAAAGCGGCTTCGTTGGAGGACGAGGTTATGAGGCT 364
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 AAAGTATAGGGAGAAGAAGAAGGCTAAAGCGGCTTCGTTGGAGGATGAGGTTATGAGGCT 660
Query 365 TAAGGCGGTTAATAATCAGCTGTTGAAGAGGTTGCAAGGTCAAGCTGCATTGGAAGCTGA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TAAGGCGGTTAATAATCAGCTGTTGAAGAGGTTGCAAGGTCAAGCTGCATTGGAAGCTGA 720
Query 425 GGTTACAAGGCTCAAGTGTTTGCTTGTTGATATAAGAGGAAGAATTGATGGAGGGATTGG 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 GGTTACTAGGCTCAAGTGTTTGCTTGTTGATATAAGAGGAAGAATTGATGGAGAGATTGG 780
Query 485 TGCATTTCCTTATCAGAAGCCTGCGGTTACAAATGTGCCTTACTCATACATGATGCATCC 544
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 781 TGCGTTTCCTTATCAGAAACCTGCGGTTACAAACGTGCCTTACTCATACATGATGCATCC 840
Query 545 TTGCAATATGCAATGCGATGTTGATAACTTGTACTGCCTGCAAAATGGGAACAACGGAGA 604
||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 841 TTGCAATATGCAATGTGATGTTGATAACTTGTACTGCCTTCAAAATGGGAATAATGGAGA 900
Query 605 AGGTGGATCGATGAATGATCAAGGGCTAAATGGTTGTGAGTTTGATCAGCTAGAATGCTT 664
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGGTGCATCGATGAATGAGCAAGGGCTAAATGGTTGTGAGTTTGATCAGCTAGAATGCTT 960
Query 665 TGCTAATCAGAATTTAGCTGGCAAGGAGATCCCTGTCTGTAGTAATGGAATTGGAACATT 724
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 961 GGCTAATCAGAATTTAGCTGGCAAGGAGATCCCTGTTTGTAGTAATGGAATTGGAACATT 1020
Query 725 CACTGTCAATGGATCCGGCGCTAATAAGAGAAAAGGTGGGCCTCGTGCAGCGAAAGCAGT 784
|||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||
Sbjct 1021 CACTGTCAATGGATCCGGCGTTAATAAGAGAAAAGGTGAGCCTCGAGCAGCGAAAGCAGT 1080
Query 785 TTGAAGTATCATCGATCATGTGAT 808
||||||||||||| ||||||||||
Sbjct 1081 TTGAAGTATCATCAATCATGTGAT 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39333337101
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5