BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931517

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G16810.1 | Symbols:  | F-box and associated interaction doma...   427    4e-119


> AT2G16810.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr2:7287412-7288945 REVERSE LENGTH=1534
Length=1534

 Score =  427 bits (231),  Expect = 4e-119
 Identities = 299/330 (91%), Gaps = 12/330 (4%)
 Strand=Plus/Plus

Query  154   TGTAtttttttGGCTTGGACTGATTCACATACTTGTATGCTTGTTAGTTTCGACGTCAGG  213
             |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct  854   TGTA-TTTTTTGGCTTGGACTGATCCACATACTTGTATGCTTGTTAGTTTCGACGTTAGG  912

Query  214   TCGGAAGAGTTCAATATGATGCAACTGCAAGTACCACGCAATGCTGGAGACACACTACCT  273
             || ||||||||| | || |  | | |||||||||||||||||||||||||||||||||||
Sbjct  913   TCTGAAGAGTTC-A-AT-A--CGA-TGCAAGTACCACGCAATGCTGGAGACACACTACCT  966

Query  274   AGATATGAGAAAGGCGTGGTTCCAATAGAGTATGGTGAAAATGTAGCTGTTTTTGATTTC  333
             ||| | ||||| || || |||  ||||||||||||||| |||||||||||| ||||||||
Sbjct  967   AGACAAGAGAAGGGTGTAGTT--AATAGAGTATGGTGAGAATGTAGCTGTTCTTGATTTC  1024

Query  334   ACCTATCTCCTAGTGAATGGTAAGGTGGATTTGTGGGTTGTGGAAGATGCTAAGAAGAAG  393
             ||| |||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct  1025  ACCGATCTCCGAGTGAATGGTAAGATGGATTTGTGGGTTGTGGAAGATGCCAAGAAGAAG  1084

Query  394   GAATGGTCGAGGAAGACTTTGGTTTTGCAGCCCTCTCACATGCATTTAG---TCACTGAT  450
             |||||||||||||||||||| ||||||||||||||||| ||||||||||   ||||||||
Sbjct  1085  GAATGGTCGAGGAAGACTTTTGTTTTGCAGCCCTCTCAGATGCATTTAGACGTCACTGAT  1144

Query  451   AATATATAGGTAGCAAAAGGTACATCTATA  480
             ||||||| || |||||||||||||||||||
Sbjct  1145  AATATATGGGCAGCAAAAGGTACATCTATA  1174



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22856536885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5