BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931549
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17080.1 | Symbols: | Arabidopsis protein of unknown functi... 887 0.0
AT2G17070.1 | Symbols: | Arabidopsis protein of unknown functi... 876 0.0
AT2G17064.1 | Symbols: | Pseudogene of AT2G17080 | chr2:742862... 693 0.0
AT4G35210.1 | Symbols: | Arabidopsis protein of unknown functi... 486 1e-136
> AT2G17080.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr2:7433326-7434117 REVERSE LENGTH=792
Length=792
Score = 887 bits (480), Expect = 0.0
Identities = 696/800 (87%), Gaps = 16/800 (2%)
Strand=Plus/Plus
Query 21 ATGGCAGTCTCTTTCCACGTTCGCTCTAACAGTTTCCCTTCTAGACT-TCCCCCACAAGC 79
||||||||||| ||||||||||| |||||||| ||||| || ||| | || |||||||||
Sbjct 1 ATGGCAGTCTCCTTCCACGTTCGATCTAACAGCTTCCCCTCAAGA-TCTCACCCACAAGC 59
Query 80 CGCTCATGTCGATGAGCAGTTGGCTCGATTAAGATCTTCTGAGGATGCCTCGA-CATCTT 138
|||||||| |||||||||||||| || || |||||||| ||| | ||||| | ||||||
Sbjct 60 TGCTCATGTGGATGAGCAGTTGGCCCGTTTGAGATCTTCCGAGCAAGCCTC-ATCATCTT 118
Query 139 CTAGCTCTTATATCTG-CAATAGACTTGAAAACCTTCAAGAGCTACATGAGTCTCTTGAC 197
| ||||||| |||||| ||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct 119 CCAGCTCTTCTATCTGCCAA-AGGCTTGACAACCTTCAAGAACTACATGAGTCTCTTGAC 177
Query 198 AAGTTTATTC-GCCTACCTGTAACACAACAAGCTCTAGGTCAAGAGCAGAACAAGAAAGC 256
||| ||| || ||| |||||| |||||||| ||||| ||||||||| |||||||||||
Sbjct 178 AAGCTTA-TCAGCCGACCTGTCACACAACAGGCTCTTTCTCAAGAGCATAACAAGAAAGC 236
Query 257 CGTCGAGCAACTTCTTGATGGATCTTTAAGGATCTTGGATTTGTGCAACATTTCCAAGGA 316
||| || || |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 237 CGTTGAACAGCTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGA 296
Query 317 TGCTTTGTCACAGATGAAAGAGGGTCTCATGGAGATCCAATCGATTCTACGAAGAAAGCG 376
|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 297 TGCTTTGTCAGAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCG 356
Query 377 CGGTGACCTACCGGGAGAGGTCAAGAAATACTTAGCCTCAAGAAGATCCCTAAAGAAGTC 436
||||| ||| ||| ||| ||||||||||||||| ||||||||| ||| || ||||||||
Sbjct 357 TGGTGATCTATCGGAAGAAGTCAAGAAATACTTAACCTCAAGAAAATCTCTTAAGAAGTC 416
Query 437 ATTCCA-AAAGGTCCTCAAGAGTTTGAAGGTCAAACAAGACC-AAGAGTGCGGCGACAA- 493
|||||| |||| | | ||| ||||||||| | ||||| | |||| | ||| |
Sbjct 417 ATTCCAGAAAG-TACAAAAGTCTTTGAAGGTTACACAAG-CTGAAGACAACAACGATGAC 474
Query 494 ATCCTTGGCAGTGTTTGGAGAAGCAGAAGATGTGACAATTGCTCTGTTTGATTCTCTGTT 553
| | ||||| || |||||||||||||||| | | ||| || |||||||||||||||| |
Sbjct 475 A-CTTTGGCTGTCTTTGGAGAAGCAGAAGCTATTACACTTTCTCTGTTTGATTCTCTCCT 533
Query 554 TTGCTTCATGTCTGGATCAAAGACTTGTAGCAAATGGTCTGTCGTCTCAAAGCTAATGAA 613
| ||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 534 TAGCTACATGTCTGGATCAAAGACTTGTAGTAAATGGTCAGTCGTCTCAAAGCTAATGAA 593
Query 614 CAAGAAGAAAGTTACATGTGAAGCTCAAGGAAACGAATTCAC-AAGGGTTGATTCCGAAT 672
|||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||
Sbjct 594 CAAGAAGAAAGTTACATGTGAAGCGCAAGAAAACGAATTCACGAAGG-TTGATTCCGAAT 652
Query 673 TCCAATCCGAAAAGACATTGAAGATGGAAGATGTTCAGATCTTAGATTCATGCATTCAAG 732
| |||||||||||||| ||||||||||| |||||||||| | |||| |||||||||||||
Sbjct 653 TTCAATCCGAAAAGACCTTGAAGATGGATGATGTTCAGAACCTAGAGTCATGCATTCAAG 712
Query 733 ATCTTGAAGATGGACTTGAATCTCTCTCTAAGTCTTTGATCAAATACAGAGTCTCAATTC 792
|||||||||||||||||||||| || || ||||| ||||| ||||||||||||||| |||
Sbjct 713 ATCTTGAAGATGGACTTGAATCACTTTCAAAGTCATTGATTAAATACAGAGTCTCATTTC 772
Query 793 TTAACATCTTAGGCCACTAA 812
||||||||||||||||||||
Sbjct 773 TTAACATCTTAGGCCACTAA 792
> AT2G17070.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr2:7430863-7431654 REVERSE LENGTH=792
Length=792
Score = 876 bits (474), Expect = 0.0
Identities = 699/805 (87%), Gaps = 26/805 (3%)
Strand=Plus/Plus
Query 21 ATGGCAGTCTCTTTCCACGTTCGCTCTAACAGTTTCCCTTCTAGACTTCCCCCACAAGCC 80
||||| ||||| ||||||||||| ||| |||||| ||| || | || || ||||||||||
Sbjct 1 ATGGCTGTCTCCTTCCACGTTCGATCTCACAGTTACCCCTCGATACCTCACCCACAAGCC 60
Query 81 GCTCATGTCGATGAGCAGTTGGCTC-GATTAAGATCTTCTGAGGATGCCTCGACATCTTC 139
|||||||| |||||||||||||| | ||||||||||||||||||| |||| ||||||||
Sbjct 61 GCTCATGTTGATGAGCAGTTGGC-CAGATTAAGATCTTCTGAGGAAACCTCAACATCTTC 119
Query 140 TAGCTCTTATATCTG-CAATAGACTTGAAAACCTTCAAGAGCTACATGAGTCTCTTGACA 198
||||||| |||||| ||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 120 AAGCTCTTCTATCTGTCAA-AGACTTGACAACCTTCAAGAACTACATGAGTCTCTTGACA 178
Query 199 AGTTTATTCGCCTACCTGTAACACAACAAGCTCTAGGTCAAGAGCAGAACAAGAAAGCCG 258
|| ||||||||||||| || |||||||| ||||| ||||||||| |||||||||||| ||
Sbjct 179 AGCTTATTCGCCTACCCGTTACACAACAGGCTCTCGGTCAAGAGAAGAACAAGAAAGACG 238
Query 259 TCGAGCAACTTCTTGATGGATCT-TTAAGGATCTTGGATTTGTGCAACATTTCCAAGGAT 317
| ||||||||||||||||||||| | || ||| |||||| |||||||||| |||||||||
Sbjct 239 TTGAGCAACTTCTTGATGGATCTCTCAA-GATATTGGATGTGTGCAACATATCCAAGGAT 297
Query 318 GCTTTGTCACAGATGAAAGAGGGTCTCATGGAGATCCAATCGATTCTACGAAGAAAGCGC 377
|||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||
Sbjct 298 GCTTTGTCGCAGATGAAAGAAGGTCTCATGGAGATCCAATCTATTCTAAGAAGAAAGCGC 357
Query 378 GGTGACCTACCGGGAGAGGTCAAGAAATACTTAGCCTCAAG-AAGATCCCTAAAGAAGTC 436
|| || ||| | |||||||| |||||||||||||||||||| ||| ||| | |||||| |
Sbjct 358 GGAGATCTATCAGGAGAGGTGAAGAAATACTTAGCCTCAAGAAAG-TCCTTCAAGAAGAC 416
Query 437 ATTCCA-AAAGGTCCTCAAGAGT--TTGAAGGTC-AAACAAGAC-CAAGAGTGC-GGCGA 490
|||||| ||| || ||| ||| | |||| | ||||| | |||| | | ||
Sbjct 417 ATTCCAGAAA-GT--ACAAAAGTCCCTCAAGG-CTGCACAAG-CAGAAGACAACAAG-GA 470
Query 491 CAAATCCTTGGCAGTGTTTGGAGAAGCAGAAGATGTGACAATTGCTCTGTTTGATTCTCT 550
|||||| ||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct 471 CAAATCTTTGGCTGTGTTTGGAGAAGCAGAAGCTGTTACAATTGCTATGTTTGATTCTCT 530
Query 551 GTTTTGCTTCATGTCTGGATCAAAGACTTGTAGCAAATGGTCTGTCGTCTCAAAGCTAAT 610
||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 531 CTTTAGCTACATGTCTGGATCAAAGACTTGTAGCAAATGGTCAGTCGTCTCAAAGCTAAT 590
Query 611 GAACAAGAAGAAAGTTACATGTGAAGCTCAAGGAAACGAATTCAC-AAGGGTTGATTCCG 669
||||||||||||| ||||||||||||| |||| |||||||||||| |||| |||| ||||
Sbjct 591 GAACAAGAAGAAAATTACATGTGAAGCACAAGAAAACGAATTCACCAAGG-TTGACTCCG 649
Query 670 AATTCCAATCCGAAAAGACATTGAAGATGGAAGATGTTCAGATCTTAGATTCATGCATTC 729
| ||||||||||| ||||| ||||| ||||| || ||||||||| |||| ||||||||||
Sbjct 650 AGTTCCAATCCGAGAAGACTTTGAAAATGGAGGACGTTCAGATCCTAGAGTCATGCATTC 709
Query 730 AAGATCTT-GAAGATGGACTTGAATC-TCTCTCTAAGTCTTTGATCAAATACAGAGTCTC 787
||||| || ||||||||||| ||||| | | |||||||||||||||||||||||||| ||
Sbjct 710 AAGAT-TTCGAAGATGGACTAGAATCAT-TATCTAAGTCTTTGATCAAATACAGAGTTTC 767
Query 788 AATTCTTAACATCTTAGGCCACTAA 812
||||||||||| ||| ||||| |||
Sbjct 768 AATTCTTAACAGCTTTGGCCATTAA 792
> AT2G17064.1 | Symbols: | Pseudogene of AT2G17080 | chr2:7428623-7429916
FORWARD LENGTH=782
Length=782
Score = 693 bits (375), Expect = 0.0
Identities = 664/796 (83%), Gaps = 49/796 (6%)
Strand=Plus/Plus
Query 38 CGTTCGCTCTAACAGTTTCCCTTCTAGACTTCCCCCACAAGCC-GCTCATGTCGATGAGC 96
|||||| ||||| |||||||| ||||||| || ||||||| || |||||||||||||||
Sbjct 15 CGTTCGTTCTAAAAGTTTCCCATCTAGACCTCACCCACAA-CCTTCTCATGTCGATGAGC 73
Query 97 AGTTGGCTCGATTAAGATCTTCTGAGGATGCCTCGACATCTTCTAGC--TCTTATATCTG 154
||||| |||| || |||||||||||||| ||||| |||||||| ||| |||||| | |
Sbjct 74 AGTTGTCTCGTTTGAGATCTTCTGAGGAAGCCTCAACATCTTCAAGCTTTCTTATCT-TC 132
Query 155 CAATAGACTTGAAAACCTTCAAGAGCTACATG-AGTCTCTTGACAAGTTTATTCGCCTAC 213
||| |||||||| |||||||| || ||||||| || ||||||||||| ||||| |||||
Sbjct 133 CAA-AGACTTGACAACCTTCAGGATCTACATGAAG-CTCTTGACAAGCTTATTTACCTAC 190
Query 214 -CTGTAACACAACAAGCTCTAGGTCAAGAGC--AGAACAAGAAAGCCGTCGAGCAACTTC 270
|| | |||||||| ||||||| |||||| | | |||| |||||| || || |||||||
Sbjct 191 TCT-TCACACAACATGCTCTAGCTCAAGAACATATAACAGGAAAGCTGTTGAACAACTTC 249
Query 271 TTGATGGATCT-TTAAGGATCTTGGATTTGTGCAACATTTCCAAGGATGCTTTGTCACAG 329
||||||||||| | || ||||||||||||||||||||||||||||||||| || || |||
Sbjct 250 TTGATGGATCTATGAA-GATCTTGGATTTGTGCAACATTTCCAAGGATGCGTTCTCGCAG 308
Query 330 ATGAAAGAGGGTCTCATGGA-GATCCAATCGATTCTACGAAGAAAGCGCGGTGACCTACC 388
|||||||||||||||||||| | | ||||| |||||| |||||||||| || || || |
Sbjct 309 ATGAAAGAGGGTCTCATGGAAG-TACAATCCATTCTAAGAAGAAAGCGTGGAGATATATC 367
Query 389 G-G-GA-GAGGTCAAGAAATACTTAGCC-TCAAGAAGATCCCTAAAGAAGTCATTCCAAA 444
| || ||||||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 368 TTGAGACGAGGTCAAGAAATACTTAGCCAT-AAGAAGATCCCTCAAGAAGTCATTCCAAA 426
Query 445 AGGTCCTCAAGAGTTTGAAGGTCAAACAAGACCAAGAGTGCGGCGACAAATCCTTGGC-A 503
| ||| | | ||||||||| |||||||||||||| ||||| || | |||| || || |
Sbjct 427 AAGTCGTTAGGAGTTTGAAACTCAAACAAGACCAACAGTGCAACGTCGAATCTTTTGCTA 486
Query 504 GTGTTTGGAGAAGCAGAAGA-TGTGACAATTGC-TCTGTTTGATTCTCTGTTTTGCTTCA 561
|||||| |||||||||| | ||| ||||| || ||| |||||||||||||| ||||||
Sbjct 487 -TGTTTGTAGAAGCAGAA-ACTGTTACAAT-GCCTCTTTTTGATTCTCTGTTCTGCTTCG 543
Query 562 TGTCTGGATCAAAGACTTGT-AGCAAATGGTCTGTCGTCTCAAAGCTAATGAACAAGAAG 620
|||||||||||||||||||| | || |||||| | | | || | |||||||||
Sbjct 544 TGTCTGGATCAAAGACTTGTGA-CAGATGGTC-G-C-T---AA-G-----GAACAAGAA- 589
Query 621 AAAG-TTACATGTGAAGCT-CAAGGAAACGAATTCAC-AAGGGTTGATTCCGAATTCCAA 677
|||| || || |||| | | |||| ||| |||||||| |||| |||| || || ||||||
Sbjct 590 AAAGGTTTCAAGTGA-GATGCAAGCAAAAGAATTCACCAAGG-TTGACTCTGATTTCCAA 647
Query 678 TCCGAAAAGACATTGAAGATGGAAGATGTTCAGATCTTAGAT-TCATGCATTCAAGATCT 736
||||| ||||| ||||||||||| |||||||||| | ||| | |||||||||||| ||||
Sbjct 648 TCCGAGAAGACCTTGAAGATGGAGGATGTTCAGAACCTAG-TGTCATGCATTCAATATCT 706
Query 737 TGAAGATGGACTTGAATCTCTCTCTAAGTCTTTGATCAAATACAGAGTCTCAATTCTTAA 796
|||||||||||||||||| || || ||||| ||||| |||| |||||||||| |||||||
Sbjct 707 TGAAGATGGACTTGAATCACTTTCAAAGTCATTGATTAAATGCAGAGTCTCATTTCTTAA 766
Query 797 CATCTTAGGCCACTAA 812
||||||||||||||||
Sbjct 767 CATCTTAGGCCACTAA 782
> AT4G35210.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr4:16751224-16752239 FORWARD LENGTH=1016
Length=1016
Score = 486 bits (263), Expect = 1e-136
Identities = 629/798 (79%), Gaps = 56/798 (7%)
Strand=Plus/Plus
Query 17 AAAAATGGCAGTCTCTTTCCACGTTCGCTCTAACAGTTTCCCTTCTAGACTTCCCCCACA 76
||||||||||||||| ||||| ||||| |||| ||| | |||||| || | | ||| ||
Sbjct 201 AAAAATGGCAGTCTCCTTCCATGTTCGATCTAGCAGCTACCCTTCAAGGCAACACCCTCA 260
Query 77 AGCCGCTCATGTCGATGAGCAGTTGGCTCGATTAAGATCTTCTGAGGATGCCTCGACATC 136
||||||||||||||||||||| || | ||||| |||||||||| ||| | | | ||
Sbjct 261 AGCCGCTCATGTCGATGAGCAATTAACCCGATTGAGATCTTCTG-GGA---C-AG-CTTC 314
Query 137 TTCTAGCTCTTATATCTGCAATAGACTTGA-AAACCTTCAAGAGC-TACATGAGTCTCTT 194
||| | |||| ||||||| | |||||| | ||||||||||| | ||||||| ||||||
Sbjct 315 TTC-A--TCTTCTATCTGCCAGAGACTT-AGCAACCTTCAAGA-CTTACATGATTCTCTT 369
Query 195 GACAAGTTTATTCGCCTACCTGTAACACAA-CAAGCTCTAGGTCAAGAGCAGAACAAGAA 253
|| ||| | |||||| || |||| || ||| || ||| || || | ||| | ||
Sbjct 370 GAAAAGATGATTCGCTTATCTGTCAC-CAACCAGGCTTTA--TC-TCA--AGATC-AG-- 420
Query 254 AGCCGTCGAGCAA-CTTCTTGATGGAT-CTTTAAGGATCTTGGATTTGTGCAACATTTCC 311
| | ||| || ||||||||||||| | | || |||||||| | |||| ||||||
Sbjct 421 A----TTGAG-AAGCTTCTTGATGGATCCATCAA-AATCTTGGACCTATGCAGCATTTCT 474
Query 312 AAGGATGCTTTGTCACAGATGAAAGAGGGTCTCATGGAGATCCAATCGATTCTACGAAGA 371
||||||| |||||| || ||||||||| |||||| |||||||||||||||| || |||||
Sbjct 475 AAGGATGGTTTGTCGCAAATGAAAGAGAGTCTCAAGGAGATCCAATCGATTGTAAGAAGA 534
Query 372 AAGCGCGGTGACCTA-CCGGGAGAGGTCAAGAAATACTTAGCCTCAAGAA-GATCCCTAA 429
||||| || || ||| || | |||||||||||||||||||||||||||| | | | | |
Sbjct 535 AAGCGTGGAGATCTATCC-GCTGAGGTCAAGAAATACTTAGCCTCAAGAAAGTTTC-TCA 592
Query 430 AGAAGTCATTCCAAAAGGTCCTCAAGAGTTTGAAGGTCAAACAAGACCAAGAGTGCGGCG 489
|||| |||||| |||| || ||||||||||| || ||||||| |||| | ||
Sbjct 593 AGAAATCATTCGAAAAAGTACTCAAGAGTTT-AA----AAACAAG-CCAAAACAAAAACG 646
Query 490 ACAAATCCTTGGCAGTGTTTGGAGAAGCAGAAGA-TGTGACAATTGCTCTGTTTGATTCT 548
|| | ||||| |||||||||||||||||| | ||| ||||||||| ||||||| |
Sbjct 647 ACGC-T--TTGGCTGTGTTTGGAGAAGCAGAA-ACTGTAACAATTGCTTTGTTTGAAAGT 702
Query 549 CTGTTTTGCTTCATGTCTGGATCAAAGACTTGTAGCAAATGGTCTGTCGTCTCAAAGCTA 608
|| ||| |||||||||| ||||||||| ||||| | |||||||| | ||||||||| |
Sbjct 703 CTATTTAGCTTCATGTCCGGATCAAAGGCTTGTGGAAAATGGTCACTGGTCTCAAAGATG 762
Query 609 ATGAACAAGAAG-AAAGTTACATGTGAAGCTCAAGGAAACGAATTCACAAGGGTTGAT-T 666
|||| | | ||| |||| ||||||||||||| ||| ||| ||||||||||| || || |
Sbjct 763 ATGAGCCA-AAGCAAAGGTACATGTGAAGCTGAAGCAAATGAATTCACAAGAGTAGACAT 821
Query 667 CCGAATTCCAATCCGAAAAGACATTG-AAGATGGAAGATGTTCAGATCTTAGAT-TCATG 724
|| ||||||||||||||| | || || ||||| ||||| |||| |||||| | |||
Sbjct 822 G-GAGTTCCAATCCGAAAAGTCGTTACAA-ATGGAGGATGTGCAGAACTTAGAAAT-ATG 878
Query 725 CATTCAAGATCTTGAAGATGG-ACTTGAATCTCTCTCTAAGTCTTTGATCAAATACAGAG 783
||||||||||||||||||||| | ||| || |||||||| || ||||||||||||||||
Sbjct 879 CATTCAAGATCTTGAAGATGGGA-TTGGGTCACTCTCTAAATCATTGATCAAATACAGAG 937
Query 784 TCTCAATTCTTAACATCT 801
|||| |||||||||||||
Sbjct 938 TCTCTATTCTTAACATCT 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40589190776
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5