BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931550
Length=244
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39580.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Putative ... 335 1e-91
> AT2G39580.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Putative
zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits
to 219 proteins in 85 species: Archae - 0; Bacteria - 144;
Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes
- 18 (source: NCBI BLink). | chr2:16510425-16517073
FORWARD LENGTH=4974
Length=4974
Score = 335 bits (181), Expect = 1e-91
Identities = 206/218 (94%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 28 AATT-TCAGTCATCTATAGATATGGAGTCCCATAGGAGTTCACCAGAGAATGACCTTTTA 86
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2255 AATTATCAGTTATCTATAGATATGGAGTCCCATAGGAGTTCACCAGAGAATGCCCTTTTA 2314
Query 87 TCGTCTGTAGCTTTGTCAGGTCCTTTATTTCGGAGCACAATCTATCATCTGAAAGTACCA 146
||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||
Sbjct 2315 TCGTCTGTAGCGTTGTCCGGTCCTTTATTTCGGAGCACAATCTATCATTTGAAAGTCCCA 2374
Query 147 GGGTCTTCAATTACGTCTCTGGGACCAGAATATACACTTCAAAACAAGTCATATAGCCTA 206
|||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 2375 GGGTCTTCAATTACATCTCTGGGACCAGAATATATACTTCAAAACAAGACATATAGCCTA 2434
Query 207 TATAGTGATAAAAGATAATGTAGGAGCTTGACTGAAAC 244
||||||||||||||| |||||||||||||||| |||||
Sbjct 2435 TATAGTGATAAAAGACAATGTAGGAGCTTGACGGAAAC 2472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11058904780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5