BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931551

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17080.1 | Symbols:  | Arabidopsis protein of unknown functi...   339    2e-92


> AT2G17080.1 | Symbols:  | Arabidopsis protein of unknown function 
(DUF241) | chr2:7433326-7434117 REVERSE LENGTH=792
Length=792

 Score =  339 bits (183),  Expect = 2e-92
 Identities = 345/419 (82%), Gaps = 28/419 (7%)
 Strand=Plus/Plus

Query  1    TTTCCAAGGATACTTTGTC-GTAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTT  59
            ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| 
Sbjct  287  TTTCCAAGGATGCTTTGTCAG-AGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTA  345

Query  60   CGAAGAAAGCGTGGAGATCTATCTGGA-GAGGTCAAGAAATACTTAACCTCGAGAAGATC  118
             ||||||||||||| |||||||| ||| || |||||||||||||||||||| |||| |||
Sbjct  346  AGAAGAAAGCGTGGTGATCTATC-GGAAGAAGTCAAGAAATACTTAACCTCAAGAAAATC  404

Query  119  -CATCAAGAAGTCATTCCA-AAAGGTCCTAAAGCGCTT-GAAGATCAAACAAGACC-AAG  174
             | | |||||||||||||| |||| | | ||||  ||| |||| | | ||||| |  |||
Sbjct  405  TCTT-AAGAAGTCATTCCAGAAAG-TACAAAAGT-CTTTGAAGGTTACACAAG-CTGAAG  460

Query  175  A-ATGCAACGACGA-ATCTTTGGCAGTTTTTGGAGAAGCTGAAGCTATTACAATGACCCT  232
            | |  |||||| || | ||||||| || ||||||||||| |||||||||||| |  | ||
Sbjct  461  ACAA-CAACGATGACA-CTTTGGCTGTCTTTGGAGAAGCAGAAGCTATTACACTTTCTCT  518

Query  233  TTTTGATTCTTTG-TTCTCCATCATGTCTGGATCAAAGGCTTGTGGCAAATGGTCATTGG  291
             ||||||||| |  ||  | | |||||||||||||||| ||||| | ||||||||| | |
Sbjct  519  GTTTGATTCTCTCCTTAGCTA-CATGTCTGGATCAAAGACTTGTAGTAAATGGTCAGTCG  577

Query  292  TCTCAAAGCTAATGAACCAGAA-AAA-TATCTCATGTAAAGCAG-AGGAAAATGAATTCA  348
            ||||||||||||||||| |||| ||| | |  ||||| |||| | | ||||| |||||||
Sbjct  578  TCTCAAAGCTAATGAACAAGAAGAAAGT-TA-CATGTGAAGC-GCAAGAAAACGAATTCA  634

Query  349  C-AAGGGTGGACTCCAAATTTCAATCCGAAAAGAC-TTAAAAAATGGAGGATGTTCAGA  405
            | |||| || | ||| ||||||||||||||||||| || || | |||| ||||||||||
Sbjct  635  CGAAGGTTG-ATTCCGAATTTCAATCCGAAAAGACCTTGAAGA-TGGATGATGTTCAGA  691



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19202280118


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5