BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931555
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17080.1 | Symbols: | Arabidopsis protein of unknown functi... 1171 0.0
AT2G17070.1 | Symbols: | Arabidopsis protein of unknown functi... 856 0.0
AT2G17064.1 | Symbols: | Pseudogene of AT2G17080 | chr2:742862... 649 0.0
> AT2G17080.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr2:7433326-7434117 REVERSE LENGTH=792
Length=792
Score = 1171 bits (634), Expect = 0.0
Identities = 742/793 (94%), Gaps = 11/793 (1%)
Strand=Plus/Plus
Query 21 ATGGCCGTCTCTTTCCACATTCGCTCGAACAGCTTCCCCTCAAGATCTCACCCACAAGCT 80
||||| ||||| |||||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGTCTCCTTCCACGTTCGATCTAACAGCTTCCCCTCAAGATCTCACCCACAAGCT 60
Query 81 GCTCATGTCGATGAGCAGTTGGCCCGTTTGAGATCTTCCGAGCAAGCCTCATCATCTTCT 140
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTCATGTGGATGAGCAGTTGGCCCGTTTGAGATCTTCCGAGCAAGCCTCATCATCTTCC 120
Query 141 AGCTCTTCTATCTGCCAAAGGCTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAAG 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCTCTTCTATCTGCCAAAGGCTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAAG 180
Query 201 CTTATCCA-CCGAGCTGTCACACAACAGGCTCTATCTCAAGAGCAGAACAAGAAAGCCGT 259
||||| || |||| ||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 181 CTTAT-CAGCCGACCTGTCACACAACAGGCTCTTTCTCAAGAGCATAACAAGAAAGCCGT 239
Query 260 TGAGCAACTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGATGC 319
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGAACAGCTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGATGC 299
Query 320 TTTGTCAGAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCGTGG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTGTCAGAGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCGTGG 359
Query 380 AGATCTATCGGGAGAGGTCAAGAAATACTTAACCACAAGAAAATCTCTTAAGAAGTCATT 439
|||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 TGATCTATCGGAAGAAGTCAAGAAATACTTAACCTCAAGAAAATCTCTTAAGAAGTCATT 419
Query 440 CCAGAAAGCACTTAAGTCTTTGAAGGTTACACAAGCCGAAGATGA-AAC-AT-----T-- 490
|||||||| || ||||||||||||||||||||||| ||||| | ||| || |
Sbjct 420 CCAGAAAGTACAAAAGTCTTTGAAGGTTACACAAGCTGAAGACAACAACGATGACACTTT 479
Query 491 GGCTGTTTTTGGAGAAGCAGAAGCTATTACAATTGCTTTGTTTGATTCTCTATTTAGCTA 550
|||||| |||||||||||||||||||||||| || || ||||||||||||| |||||||
Sbjct 480 GGCTGTCTTTGGAGAAGCAGAAGCTATTACACTTTCTCTGTTTGATTCTCTCCTTAGCTA 539
Query 551 CATGTCTGGATCAAAGATTTGTAGCAAATGGTCAGTCGTCTCACAGCTAATGAACAAGAA 610
||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||
Sbjct 540 CATGTCTGGATCAAAGACTTGTAGTAAATGGTCAGTCGTCTCAAAGCTAATGAACAAGAA 599
Query 611 GAAAGCTACATGTGAAGCGCAAGCAAACGAATTCACGAAAGTTGATTCCGAATGTCAATA 670
||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||
Sbjct 600 GAAAGTTACATGTGAAGCGCAAGAAAACGAATTCACGAAGGTTGATTCCGAATTTCAATC 659
Query 671 CGAAAAGACCTTGAAGATGGAGGATGTTCAGAAACTAGAGTCATGCATACAAGATCTTGA 730
||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 660 CGAAAAGACCTTGAAGATGGATGATGTTCAGAACCTAGAGTCATGCATTCAAGATCTTGA 719
Query 731 AGATGGACTTGAATCACTTTCAAAGTCATTGATTAAATACAGAGTCTCATTTCTTAACAT 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGATGGACTTGAATCACTTTCAAAGTCATTGATTAAATACAGAGTCTCATTTCTTAACAT 779
Query 791 CTTAGGCCATTAA 803
||||||||| |||
Sbjct 780 CTTAGGCCACTAA 792
> AT2G17070.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr2:7430863-7431654 REVERSE LENGTH=792
Length=792
Score = 856 bits (463), Expect = 0.0
Identities = 690/798 (86%), Gaps = 21/798 (3%)
Strand=Plus/Plus
Query 21 ATGGCCGTCTCTTTCCACATTCGCTCGAACAGCTT-CCCCTCAAGATCTCACCCACAAGC 79
||||| ||||| |||||| |||| || |||| || |||||| | | |||||||||||||
Sbjct 1 ATGGCTGTCTCCTTCCACGTTCGATCTCACAG-TTACCCCTCGATACCTCACCCACAAGC 59
Query 80 TGCTCATGTCGATGAGCAGTTGGCCCGTTTGAGATCTTCCGAGCAAGCCTCATCATCTTC 139
|||||||| ||||||||||||||| | || |||||||| ||| || ||||| |||||||
Sbjct 60 CGCTCATGTTGATGAGCAGTTGGCCAGATTAAGATCTTCTGAGGAAACCTCAACATCTTC 119
Query 140 TAGCTCTTCTATCTGCCAAAGGCTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAA 199
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAGCTCTTCTATCTGTCAAAGACTTGACAACCTTCAAGAACTACATGAGTCTCTTGACAA 179
Query 200 GCTTATCCACCGAGCTGTCACACAACAGGCTCTATCTCAAGAGCAGAACAAGAAAGCCGT 259
|||||| | || | | || |||||||||||||| ||||||| |||||||||||| |||
Sbjct 180 GCTTATTCGCCTACCCGTTACACAACAGGCTCTCGGTCAAGAGAAGAACAAGAAAGACGT 239
Query 260 TGAGCAACTTCTTGATGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGATGC 319
||||||||||||||||||||| |||| ||| |||||| |||||||||| |||||||||||
Sbjct 240 TGAGCAACTTCTTGATGGATCTCTCAAGATATTGGATGTGTGCAACATATCCAAGGATGC 299
Query 320 TTTGTCAG-AGATGAAAGAGGGTCTCATGGAGATCCAATCAATTCTAAGAAGAAAGCGTG 378
|||||| | |||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 300 TTTGTC-GCAGATGAAAGAAGGTCTCATGGAGATCCAATCTATTCTAAGAAGAAAGCGCG 358
Query 379 GAGATCTATCGGGAGAGGTCAAGAAATACTTAACCACAAGAAAATCTCTT-AAGAAGTCA 437
|||||||||| |||||||| |||||||||||| || ||||||| || ||| |||||| ||
Sbjct 359 GAGATCTATCAGGAGAGGTGAAGAAATACTTAGCCTCAAGAAAGTC-CTTCAAGAAGACA 417
Query 438 TTCCAGAAAGCACTTAAGTCTTTGAAGGTTACACAAGCCGAAGATGA-AA---CA--T-T 490
|||||||||| || ||||| | |||| | ||||||| ||||| | || || | |
Sbjct 418 TTCCAGAAAGTACAAAAGTCCCTCAAGGCTGCACAAGCAGAAGACAACAAGGACAAATCT 477
Query 491 --GGCTGTTTTTGGAGAAGCAGAAGCTATTACAATTGCTTTGTTTGATTCTCTATTTAGC 548
|||||| |||||||||||||||||| ||||||||||| ||||||||||||| ||||||
Sbjct 478 TTGGCTGTGTTTGGAGAAGCAGAAGCTGTTACAATTGCTATGTTTGATTCTCTCTTTAGC 537
Query 549 TACATGTCTGGATCAAAGATTTGTAGCAAATGGTCAGTCGTCTCACAGCTAATGAACAAG 608
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 538 TACATGTCTGGATCAAAGACTTGTAGCAAATGGTCAGTCGTCTCAAAGCTAATGAACAAG 597
Query 609 AAGAAAGCTACATGTGAAGCGCAAGCAAACGAATTCACGAAAGTTGATTCCGAATGTC-A 667
|||||| |||||||||||| |||| |||||||||||| || ||||| ||||| | || |
Sbjct 598 AAGAAAATTACATGTGAAGCACAAGAAAACGAATTCACCAAGGTTGACTCCGAGT-TCCA 656
Query 668 ATACGAAAAGACCTTGAAGATGGAGGATGTTCAGAAACTAGAGTCATGCATACAAGATCT 727
|| ||| ||||| ||||| |||||||| ||||||| |||||||||||||| |||||| |
Sbjct 657 ATCCGAGAAGACTTTGAAAATGGAGGACGTTCAGATCCTAGAGTCATGCATTCAAGAT-T 715
Query 728 T-GAAGATGGACTTGAATCACTT-TCAAAGTCATTGATTAAATACAGAGTCTCATTTCTT 785
| ||||||||||| |||||| || || ||||| ||||| ||||||||||| ||| |||||
Sbjct 716 TCGAAGATGGACTAGAATCA-TTATCTAAGTCTTTGATCAAATACAGAGTTTCAATTCTT 774
Query 786 AACATCTTAGGCCATTAA 803
|||| ||| |||||||||
Sbjct 775 AACAGCTTTGGCCATTAA 792
> AT2G17064.1 | Symbols: | Pseudogene of AT2G17080 | chr2:7428623-7429916
FORWARD LENGTH=782
Length=782
Score = 649 bits (351), Expect = 0.0
Identities = 653/791 (83%), Gaps = 52/791 (7%)
Strand=Plus/Plus
Query 40 TTCGCTCGAACAGCTTCCCCTCAAGATCTCACCCACAAGCTGCTCATGTCGATGAGCAGT 99
|||| || || || ||||| || ||| ||||||||||| || ||||||||||||||||||
Sbjct 17 TTCGTTCTAAAAGTTTCCCATCTAGACCTCACCCACAACCTTCTCATGTCGATGAGCAGT 76
Query 100 TGGCCCGTTTGAGATCTTCCGAGCAAGCCTCATCATCTTCTAGCTCTTC-TATCTGCCAA 158
|| | |||||||||||||| ||| |||||||| ||||||| |||| ||| ||||| ||||
Sbjct 77 TGTCTCGTTTGAGATCTTCTGAGGAAGCCTCAACATCTTCAAGCT-TTCTTATCTTCCAA 135
Query 159 AGGCTTGACAACCTTCAAGAACTACATG-AGTCTCTTGACAAGCTTATCCACCGAGCT-G 216
|| |||||||||||||| || ||||||| || |||||||||||||||| ||| | ||
Sbjct 136 AGACTTGACAACCTTCAGGATCTACATGAAG-CTCTTGACAAGCTTATTTACCTA-CTCT 193
Query 217 TCACACAACAGGCTCTATCTCAAGAGC--AGAACAAGAAAGCCGTTGAGCAACTTCTTGA 274
|||||||||| |||||| ||||||| | | |||| |||||| ||||| |||||||||||
Sbjct 194 TCACACAACATGCTCTAGCTCAAGAACATATAACAGGAAAGCTGTTGAACAACTTCTTGA 253
Query 275 TGGATCCCTCAGGATCTTGGATTTGTGCAACATTTCCAAGGATGCTTTGTCAG-AGATGA 333
|||||| | | ||||||||||||||||||||||||||||||||| || || | ||||||
Sbjct 254 TGGATCTATGAAGATCTTGGATTTGTGCAACATTTCCAAGGATGCGTTCTC-GCAGATGA 312
Query 334 AAGAGGGTCTCATGGA-GATCCAATCAATTCTAAGAAGAAAGCGTGGAGATCTATCG-G- 390
|||||||||||||||| | | ||||| |||||||||||||||||||||||| |||| |
Sbjct 313 AAGAGGGTCTCATGGAAG-TACAATCCATTCTAAGAAGAAAGCGTGGAGATATATCTTGA 371
Query 391 GA-GAGGTCAAGAAATACTTAACCACAAGAAAATCTCTTAAGAAGTCATTCCAGAAAG-C 448
|| |||||||||||||||||| ||| ||||| ||| || |||||||||||||| |||| |
Sbjct 372 GACGAGGTCAAGAAATACTTAGCCATAAGAAGATCCCTCAAGAAGTCATTCCAAAAAGTC 431
Query 449 ACTTAAGTCTTTGAAGGTTACACAAG-CCGA-AG---A---T-GAAACATTGGCTGTTTT 499
||| | |||||| | | ||||| || | || | | ||| | || ||| | ||
Sbjct 432 G-TTAGGAGTTTGAAACTCAAACAAGACCAACAGTGCAACGTCGAATCTTTTGCTATGTT 490
Query 500 TGGAGAAGCAGAAGCTATTACAATTGC-T-TTGTTTGATTCTCTATT-TAGCTACATGTC 556
|| |||||||||| || ||||||| || | || ||||||||||| || | ||| | ||||
Sbjct 491 TGTAGAAGCAGAAACTGTTACAAT-GCCTCTT-TTTGATTCTCTGTTCT-GCTTCGTGTC 547
Query 557 TGGATCAAAGATTTGT-AGCAAATGGTCAGTCGTCTCACAGCTAATGAACAAGAAGAAAG 615
||||||||||| |||| | || |||||| | | | | || ||||||||| ||||
Sbjct 548 TGGATCAAAGACTTGTGA-CAGATGGTC-G-C-T---A-AG-----GAACAAGAA-AAAG 593
Query 616 CTA-CATGTGA-AGCGCAAGCAAACGAATTCACGAAAGTTGATTCCGAATGTC-AATACG 672
| || |||| | ||||||||| |||||||| || ||||| || || | || ||| ||
Sbjct 594 GTTTCAAGTGAGAT-GCAAGCAAAAGAATTCACCAAGGTTGACTCTGATT-TCCAATCCG 651
Query 673 AAAAGACCTTGAAGATGGAGGATGTTCAGAAACTAGAGTCATGCATACAAGATCTTGAAG 732
| ||||||||||||||||||||||||||||| |||| ||||||||| ||| |||||||||
Sbjct 652 AGAAGACCTTGAAGATGGAGGATGTTCAGAACCTAGTGTCATGCATTCAATATCTTGAAG 711
Query 733 ATGGACTTGAATCACTTTCAAAGTCATTGATTAAATACAGAGTCTCATTTCTTAACATCT 792
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 712 ATGGACTTGAATCACTTTCAAAGTCATTGATTAAATGCAGAGTCTCATTTCTTAACATCT 771
Query 793 TAGGCCATTAA 803
||||||| |||
Sbjct 772 TAGGCCACTAA 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40086849306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5