BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931559
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72680.1 | Symbols: ATCAD1, CAD1 | cinnamyl-alcohol dehydrog... 996 0.0
AT2G44120.2 | Symbols: | Ribosomal protein L30/L7 family prote... 213 2e-54
> AT1G72680.1 | Symbols: ATCAD1, CAD1 | cinnamyl-alcohol dehydrogenase
| chr1:27359232-27361016 REVERSE LENGTH=1322
Length=1322
Score = 996 bits (539), Expect = 0.0
Identities = 601/631 (95%), Gaps = 4/631 (1%)
Strand=Plus/Plus
Query 198 CCTAATGTTCAACGATTCAAAGTTGGAGACCATGTTGGTGTTAGAACGTATGTTAACTCC 257
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 381 CCTAATGTTCAACGATTCAAAGTTGGAGACCATGTTGGTGTTGGAACGTATGTTAACTCC 440
Query 258 TGCAGGGAGTGTGAATATTGTAACGACGGACAAGCAGTTAATTGTGCAAAAGGAGTTTTT 317
||||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||
Sbjct 441 TGCAGGGAGTGTGAATATTGTAATGAAGGACAAGAAGTTAATTGTGCGAAAGGAGTTTTT 500
Query 318 ACTTTCAATGGTATCGATCATGATGGCTCTGTTACTAAAGGAGGCTACTCCAGCCACATT 377
||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 501 ACTTTCAATGGCATTGATCATGATGGCTCTGTTACTAAAGGAGGCTACTCTAGTCACATT 560
Query 378 GTTGTTCATGAGAGGTACTGCTACAAGATACCTGTGGACTATCCCTTGGAATCAGCTGCA 437
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GTTGTTCATGAAAGGTACTGCTACAAGATACCTGTGGACTATCCCTTGGAATCAGCTGCA 620
Query 438 CCATTACTCTGTGCTGGAATCACGGTTTTTGCGCCTATGATGCATCACAATATGAATCAA 497
|||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||
Sbjct 621 CCATTACTCTGTGCTGGAATCACGGTTTATGCTCCTATGATGCGTCACAATATGAATCAA 680
Query 498 CCTGGTAAATCTCTTGGGGTGATTGGGCTAGGTGGTCTTGGGCACATGGCAGTTAAATTT 557
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||
Sbjct 681 CCTGGTAAATCTCTTGGGGTGATCGGGCTAGGTGGTCTTGGACACATGGCGGTTAAGTTT 740
Query 558 GGCAAGGCTTTTGGACTTAGTGTTACGGTTTTTAGCACCAGCATTTCCAAGAAAGAGGAA 617
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 741 GGCAAGGCTTTTGGACTTAGTGTTACGGTTTTTAGCACCAGCATTTCCAAGAAAGAAGAA 800
Query 618 GCTTTGAATCTGCTGGGAGCTGAGAATTTTGTTATCTCGTCTGACCATG-CTCAGATGAA 676
|||||||||||||| |||||||||||||| |||||||| |||||||||| | ||||||||
Sbjct 801 GCTTTGAATCTGCTAGGAGCTGAGAATTTCGTTATCTCATCTGACCATGAC-CAGATGAA 859
Query 677 GGCACTAGCGAAATCTCTAGACTTTATCA-TTGATACAGCATCTGGTGATCACGCGTTTG 735
|||||||| |||||||||||||||| | | |||| |||||||||||||||||||||||||
Sbjct 860 GGCACTAGAGAAATCTCTAGACTTTCT-AGTTGACACAGCATCTGGTGATCACGCGTTTG 918
Query 736 ATCCTTACATGTCTCTCTTGAAGATTGCTGGAACTTATGTCCTGGTTGGTTTCCCAAGTG 795
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 919 ATCCTTACATGTCTCTCTTGAAGATTGCTGGAACTTATGTATTGGTTGGTTTCCCAAGTG 978
Query 796 AAATTAAAATCAGTCCTGCCAATCTCAATCT 826
|||||||||||||||||||||||||||||||
Sbjct 979 AAATTAAAATCAGTCCTGCCAATCTCAATCT 1009
> AT2G44120.2 | Symbols: | Ribosomal protein L30/L7 family protein
| chr2:18249042-18250708 REVERSE LENGTH=1220
Length=1220
Score = 213 bits (115), Expect = 2e-54
Identities = 140/152 (92%), Gaps = 1/152 (1%)
Strand=Plus/Plus
Query 1 TCCAAGAGTCTGTGCTAAAAAAGATCAAGAGGCAAGTGGAATGGACATTGGTCAAGAAAG 60
||| ||||||||||||||| |||||||||||||||| ||||||| |||||| ||||||||
Sbjct 330 TCC-AGAGTCTGTGCTAAAGAAGATCAAGAGGCAAGAGGAATGGGCATTGGCCAAGAAAG 388
Query 61 ATGAAGCTGTAGCTGCTAAGAAGAAGAGTGTTGAGACCCGCAAGCTCATCTTCAAGAGAG 120
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 389 ATGAAGCTGTAGCTGCTAAGAAGAAGAGTGTTGAGGCCCGCAAGCTTATCTTCAAGAGAG 448
Query 121 CTGAGCAGTATGAGAGAGAGTATGCTGAGAAG 152
|||||||||||| | ||| || |||||||||
Sbjct 449 CTGAGCAGTATGCCAAAGAATACGCTGAGAAG 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41895278598
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5