BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931568
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17180.1 | Symbols: | C2H2-like zinc finger protein | chr2:... 1110 0.0
> AT2G17180.1 | Symbols: | C2H2-like zinc finger protein | chr2:7476835-7477647
REVERSE LENGTH=813
Length=813
Score = 1110 bits (601), Expect = 0.0
Identities = 761/834 (91%), Gaps = 27/834 (3%)
Strand=Plus/Plus
Query 21 ATGTCGAACACTTCAAACTCCGATCCCAATTCCGATATCCCATTTGCTTCCTCCAATGTA 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGAACACTTCAAACTCCGATCCCAATTCCGATATCCCATTTGCTTCCTCCAATGTA 60
Query 81 ACTCTTCCGAGTTACAATCAAAACCCAAGAAGAAAACGTACTAAACTCACCAACAACGAA 140
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTCTTCCTAGTTACAATCAAAACCCAAGAAGAAAACGTACTAAACTCACCAACAACGAA 120
Query 141 ACCGGTTCTTCTTCGTCTTCTCCAAGGCCTAAACCGGTCACGCAACCGGATCCTGATGCT 200
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GTCGGTTCTTCTTCGTCTTCTCCAAGGCCTAAACCGGTCACGCAACCGGACCCTGATGCT 180
Query 201 TCACAAATCGCAC--C-ATGTACTGAATGTGGTAAACAATTCGGGTCATTGAAGGCACTC 257
||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 TCACAAATCGCACGACCATGTACTGAATGTGGTAAACAATTCGGGTCACTGAAGGCACTC 240
Query 258 TTTGGACACATGAGATGTCACCCTGAACGTCAGTGGCGTGGCATCAACCCTCCTGT-TAA 316
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 241 TTTGGACACATGAGATGTCACCCTGAACGTCAGTGGCGTGGCATCAACCCTCCT-TCTAA 299
Query 317 GTATCAA-CGTGGGATCAACGCAACCGCTGCGTCATCATCCTCGAGTTGGGATCTATCGG 375
| |||| ||| |||||||| ||| ||||||||||||||||||||||||||||| ||| |
Sbjct 300 CT-TCAAACGTAGGATCAACTCAAACGCTGCGTCATCATCCTCGAGTTGGGATCCATCTG 358
Query 376 AGGAAGAGCATAACATAGCCTCTT-TATTACTAATGTTGGCTAGTGGTGGTGTCTCGACC 434
|||||||||||||||||||||| | | ||||||||| |||||| ||||| |||| | |||
Sbjct 359 AGGAAGAGCATAACATAGCCTCCTGT-TTACTAATGATGGCTAATGGTGATGTCCCAACC 417
Query 435 GGTTCAAGTGGAGTTGAGGGACGGTTTAAGTGTGGTGGTTGTAAGAAAGTGTTTGGGTCA 494
||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct 418 CGTTCAAGTGAAGTTGAGGAACGGTTTGAGTGTGATGGTTGTAAGAAAGTGTTTGGGTCA 477
Query 495 CATCAAGCGTTAGATGGACATAGAGAAACACATAAACATGTCAAAGGATGTTTCCCCATT 554
||||||||||||| |||||||||| |||||||||| | ||||||||||||||| ||| |
Sbjct 478 CATCAAGCGTTAGGCGGACATAGAGCAACACATAAAGACGTCAAAGGATGTTTCGCCAAT 537
Query 555 ACAAACATAAACGAAGAtcctcctcctcctcctcctcctcctcctcctcctcctcAAGAG 614
| |||||||| |||||||||||||||||| ||||||| |||||
Sbjct 538 AAAAACATAACCGAAGATCCTCCTCCTCCACCTCCTC------------------AAGAG 579
Query 615 ATCGTTGATAAAGATAAGGGCAAGGGTGTGAAGTTGGTCTCAGGCATGAATCATCGATGT 674
||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||||
Sbjct 580 ATCGTTGATCAAGATAAGGGCAAGAGTGTGAAGTTGGTCTCGGGGATGAATCATCGATGT 639
Query 675 AACATATGTTTTAGAGTGTTCTCCAGTGGTCAAGCGTTAGGTGGTCACATGAGATGTCAT 734
||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 640 AACATCTGTTCTAGAGTGTTCTCCAGTGGTCAAGCGTTAGGAGGTCACATGAGATGTCAT 699
Query 735 TGGGAGAAAGATCAGGAAGAGAAGCAAGTCAAGGGCATCGATCTTAATGTTCCTGCGACG 794
||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| ||
Sbjct 700 TGGGAGAAAGATCAGGAAGAGAACCAAGTCAGGGGCATTGATCTTAATGTTCCTGCGGCG 759
Query 795 ACATCTTCAGACACAACGTTAGATTGTTCTTTAGATCTTAGGTTAGGACTTTGA 848
|||||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 760 ACATCTTCAGACACAACGTTAGGTTGTTCCTTGGATCTTAGGTTAGGACTTTGA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42347385921
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5