BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931582

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17300.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   652    0.0  


> AT2G17300.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; 
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G35320.1); 
Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:7522401-7523033 
REVERSE LENGTH=633
Length=633

 Score =  652 bits (353),  Expect = 0.0
 Identities = 407/431 (94%), Gaps = 12/431 (3%)
 Strand=Plus/Plus

Query  15   CAAGCCATGAGCTCTTCAATTATGAAAACCCTTCAGATTCGTAAACCAACTTCTCTTCCT  74
            |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  144  CAAGCCATGAGCTCCTCAATTATGAAAACCCTTCAAATTCGTAAACCAACTTCTCTCCCT  203

Query  75   ATCTCCTCCACCACCATAGATGAGCCAGGGCTTCTCCGTCGTCGtctctcttctctttct  134
            ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  204  ATCTCTTCCACCACCACAGATGAGCCAGGGCTTCTCCGTCGTCGTCTCTCTTCTCTTTCT  263

Query  135  ctaaatctctcACGTAACCAACCTTCCACCGTCTCAAGATCCAAGTCGGTCTCTGACATG  194
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  264  CTAAATCTCTCACGTAACCAACCTTCCACCGTCTCAAGATCCAAGTCTGTCTCTGACATG  323

Query  195  GGAGAGCAAGGAGGGAGCTCCGTGAAAGAATGGTGGGAATGGAGTTGGTCATGGGTTCTT  254
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  324  GGAGAGCAAGGAGGGAGCTCCGTGAAAGAATGGTGGGAATGGAGTTGGTCATGGATTCTT  383

Query  255  TTAAAGAAGTTACCAATCTTTTTCACAGATCTTGAGGTTAACAAGAACGAAACCAAATCA  314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  384  TTAAAGAAGTTACCAATCTTTTTCACAGATCTTGAGGTTAACAAGAACGAAACCAAATCA  443

Query  315  TCATTGGGGAAT-A-----G------CTTCACTCACGTCTTCTTTAAGCTCCGATCTGAG  362
            |||||||||||| |     |      ||||| ||||||||| ||||||||||||||||| 
Sbjct  444  TCATTGGGGAATCAACAAAGAGGTAGCTTCATTCACGTCTTTTTTAAGCTCCGATCTGAA  503

Query  363  ATCCGCCGTCTCCTCCGTCCTTCCTCCGACTCTCTTCCTCTCTCTTGCAAACACGGACAG  422
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  504  ATCCGCCGTCTCCTCCGTCCTTCCTCAGACTCTCTTCCTCTCTCTTGCAAACATGGACAG  563

Query  423  CGATGACGTGG  433
            |||||||||||
Sbjct  564  CGATGACGTGG  574



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21313525576


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5