BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931589

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17350.1 | Symbols:  | unknown protein; Has 119 Blast hits t...   656    0.0  


> AT2G17350.1 | Symbols:  | unknown protein; Has 119 Blast hits 
to 93 proteins in 40 species: Archae - 0; Bacteria - 3; Metazoa 
- 18; Fungi - 12; Plants - 44; Viruses - 0; Other Eukaryotes 
- 42 (source: NCBI BLink). | chr2:7545538-7546374 REVERSE 
LENGTH=745
Length=745

 Score =  656 bits (355),  Expect = 0.0
 Identities = 383/396 (97%), Gaps = 4/396 (1%)
 Strand=Plus/Plus

Query  1    GAATTTGTTTCGAAGACGAACGATGTCGCTGAGAATTAAATTAGTGGTGGATAAGTTTGT  60
            ||||||| |||| | | | |||||||||||||||||||||||||||||||||||||||||
Sbjct  209  GAATTTGCTTCG-A-A-G-ACGATGTCGCTGAGAATTAAATTAGTGGTGGATAAGTTTGT  264

Query  61   GGAGGAGCTTAAGCAAGCACTTGACGCTGATATACAAGATCGGATCATGAAGGAGAGAGA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  265  GGAGGAGCTTAAGCAAGCACTTGACGCTGATATACAAGATCGGATCATGAAGGAGAGAGA  324

Query  121  GATGCAAAGTTATATCGAAGAGCGTGAGCGTGAAGTCGCTGAACGAGAAGCTGCGTGGAA  180
            |||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  325  GATGCAGAGTTATATAGAAGAGCGTGAGCGTGAAGTCGCTGAGCGAGAAGCTGCCTGGAA  384

Query  181  AGCTGAGCTCTCTCGCCGTGAGACGGAGATTGCTAGACAGGAAGCGAGGTTGAAGATGGA  240
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  385  AGCTGAGCTCTCTCGCCGTGAGACGGAGATCGCTAGACAGGAAGCGAGGTTGAAGATGGA  444

Query  241  GAGAGAGAATCTGGAGAAGGAGAAGAGTGTTCTCATGGGGACTGCGTCGAATCAGGATAA  300
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  445  GAGAGAGAATCTGGAGAAGGAGAAGAGTGTTCTTATGGGGACTGCGTCGAATCAGGATAA  504

Query  301  TCAAGATGGTGCTCTTGAAATTACTGTGAGTGGTGAGAAATATCGATGTCTTAGATTCTC  360
            ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  505  TCAAGATGGTGCTCTGGAAATTACTGTGAGTGGTGAGAAATATCGGTGTCTTAGATTCTC  564

Query  361  TAAGGCTAAGAAATGAGGTTGGAAATTGGAATCTGG  396
            ||||||||||||||||||||||||||||||||||||
Sbjct  565  TAAGGCTAAGAAATGAGGTTGGAAATTGGAATCTGG  600



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18699602628


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5