BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931590
Length=914
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17360.1 | Symbols: | Ribosomal protein S4 (RPS4A) family p... 1467 0.0
AT5G07090.1 | Symbols: | Ribosomal protein S4 (RPS4A) family p... 1042 0.0
AT5G58420.1 | Symbols: | Ribosomal protein S4 (RPS4A) family p... 989 0.0
> AT2G17360.1 | Symbols: | Ribosomal protein S4 (RPS4A) family
protein | chr2:7546480-7548313 FORWARD LENGTH=1079
Length=1079
Score = 1467 bits (794), Expect = 0.0
Identities = 880/921 (96%), Gaps = 7/921 (1%)
Strand=Plus/Plus
Query 1 AAACTTAAAATTAGGGTTTTGAGTTTCGCTTCTTCTGAAACCCTAGAAGATATAAGTGAG 60
|||||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||
Sbjct 12 AAACTTAAAATTAGGGCTTTGTGTTTCGCTTCTTCTCAAACCCTAGAAGATATAATTGAG 71
Query 61 ACTGGTTTGCTTAGCCGCGGAGAACTCAGAACTCATTCGCTGCAAACATGGCAAGAGGTT 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 ACTGGCTTGCTTAGCCGCGGAGAACTCAGAACTCATTCGCTGCAAACATGGCAAGAGGTT 131
Query 121 TGAAGAAGCATTTGAAGAGGATCAATGCTCCTAAGCATTGGATGCTTGATAAACTTGGTG 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 132 TGAAGAAGCATTTGAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGATAAACTTGGTG 191
Query 181 GTGCCTTTGCCCCCAAGCCGTCTTCTGGGCCACACAAGTCTAGGGAGTGTTTACCCCTGG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 192 GTGCCTTTGCCCCCAAGCCGTCTTCTGGGCCACACAAGTCTAGGGAGTGTTTACCCTTGG 251
Query 241 TTCTTATCATCAGGAACAGGTTGAAGTATGCCCTTACATACAGAGAAGTGATCTCGATCT 300
| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 252 TCCTTATCATCAGGAACAGGTTGAAGTATGCTCTGACATACAGAGAAGTGATTTCGATCT 311
Query 301 TGATGCAAAGGCATATTCAAGTTGATGGGAAAGTGAGGACTGACAAGACTTACCCTGCTG 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TGATGCAAAGGCATATTCAGGTTGATGGGAAAGTGAGGACTGACAAGACTTACCCTGCTG 371
Query 361 GTTTCATGGATGTTGTGTCTATCCCAAAAACAAATGAGAACTTCCGTCTTTTGTATGACA 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 372 GTTTCATGGATGTTGTGTCTATCCCCAAAACAAATGAGAACTTCCGTCTTTTGTATGACA 431
Query 421 CCAAGGGACGCTTCCGTCTCCACTCCATCAAGGATGAGGAAGCGAAGTTCAAGCTTTGCA 480
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 432 CCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGAGGCTAAGTTCAAGCTTTGCA 491
Query 481 AGGTGAGATCGATCCAGTTTGGTCAGAAGGGCATTCCGTTCTTGAACACATATGATGGTC 540
| |||||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 492 AAGTGAGATCGATCCAATTTGGTCAGAAGGGTATTCCCTACTTGAACACATATGATGGTC 551
Query 541 GCACCATCCGTTACCCCGACCCGCTCATCAAGCCTAACGACACCATCAAGCTTGACCTTG 600
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 552 GCACCATCCGTTATCCTGACCCGCTCATCAAGCCTAACGACACCATCAAGCTCGACCTTG 611
Query 601 AGGAGAACAAGATTGTGGAGTTCATTAAGTTTGATGTGGGCAATGTAGTTATGGTCACTG 660
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 612 AGGAGAACAAGATTGTGGAGTTCATTAAGTTTGATGTGGGCAACGTAGTTATGGTCACTG 671
Query 661 GAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAGAACCGTGAGAAACACAAGGGAAGCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 672 GAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAGAACCGTGAGAAACACAAGGGTAGCT 731
Query 721 TTGAAACCATCCACATTCAAGACTCAACAGGACATGAGTTTGCTACAAGGTTGGGAAATG 780
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 732 TTGAAACCATCCACATTCAAGACTCAACAGGACATGAGTTTGCAACAAGGTTGGGAAATG 791
Query 781 TGTTCACAATCGGGAAAGGAACAAAGCCATGGGTGTCTCTACCAAAGGGCAAAGGTATTA 840
||| ||||||||| || |||||||||||||||||||| || |||||||| ||||||||||
Sbjct 792 TGTACACAATCGGTAAGGGAACAAAGCCATGGGTGTCCCTTCCAAAGGGTAAAGGTATTA 851
Query 841 AGTTGACCATCATTGAGGAAGCCAGGAAGAGACTTTCTGCTCAACAAGCTT-A-A-T-A- 895
||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 852 AGTTGACCATCATTGAGGAAGCCAGGAAGAGACTTTCTGCTCAACAAGCTTGATAGTTAA 911
Query 896 --CTATGCTTTGTTTTCCAGT 914
||||||| |||||||||||
Sbjct 912 TACTATGCTCTGTTTTCCAGT 932
> AT5G07090.1 | Symbols: | Ribosomal protein S4 (RPS4A) family
protein | chr5:2202380-2204077 FORWARD LENGTH=1091
Length=1091
Score = 1042 bits (564), Expect = 0.0
Identities = 719/795 (90%), Gaps = 6/795 (1%)
Strand=Plus/Plus
Query 99 GCTGCAAACATGGCAAGAGGTTTGAAGAAGCATTTGAAGAGGATCAATGCTCCTAAGCAT 158
|||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||
Sbjct 22 GCTGCAAACATGGCAAGAGGATTGAAGAAGCATCTAAAGAGGCTCAATGCTCCTAAGCAT 81
Query 159 TGGATGCTTGATAAACTTGGTGGTGCCTTTGCCCCCAAGCCGTCTTCTGGGCCACACAAG 218
||||||||||| ||||||||||||||||| || ||||| || |||||||| || ||||||
Sbjct 82 TGGATGCTTGACAAACTTGGTGGTGCCTTCGCTCCCAAACCATCTTCTGGACCTCACAAG 141
Query 219 TCTAGGGAGTGT-TTACCCCTGGTTCTTATCATCAGGAACAGGTTGAAGTATGCCCTT-A 276
|| ||||||||| || || || || || ||||||||||||||||||||||||| | || |
Sbjct 142 TCGAGGGAGTGTCTT-CCTCTTGTCCTGATCATCAGGAACAGGTTGAAGTATG-CTTTGA 199
Query 277 CATACAGAGAAGTGATCTCGATCTTGATGCAAAGGCATATTCAAGTTGATGGGAAAGTGA 336
| ||| | ||||| ||||| |||||||||||||||||||| ||||||||||| ||||| |
Sbjct 200 CTTACCGTGAAGTTATCTCTATCTTGATGCAAAGGCATATCCAAGTTGATGGCAAAGTCA 259
Query 337 GGACTGACAAGACTTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCAAAAACAAATG 396
|||||||||||||||||||||||||||||||||||||||| || ||||| || || ||||
Sbjct 260 GGACTGACAAGACTTACCCTGCTGGTTTCATGGATGTTGTATCCATCCCCAAGACCAATG 319
Query 397 AGAACTTCCGTCTTTTGTATGACACCAAGGGACGCTTCCGTCTCCACTCCATCAAGGATG 456
|||||||||||||| | || |||||||||||||| |||||||||||||||||||||||||
Sbjct 320 AGAACTTCCGTCTTCTCTACGACACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATG 379
Query 457 AGGAAGCGAAGTTCAAGCTTTGCAAGGTGAGATCGATCCAGTTTGGTCAGAAGGGCATTC 516
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 380 AGGAAGCAAAGTTCAAGCTTTGCAAGGTTAGATCTATCCAGTTTGGTCAGAAGGGAATTC 439
Query 517 CGTTCTTGAACACATATGATGGTCGCACCATCCGTTACCCCGACCCGCTCATCAAGCCTA 576
| | | ||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 440 CATACCTGAACACTTATGATGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCAA 499
Query 577 ACGACACCATCAAGCTTGACCTTGAGGAGAACAAGATTGTGGAGTTCATTAAGTTTGATG 636
| |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 500 ATGACACCATCAAGCTGGACCTTGAGGAGAACAAGATTGTTGAGTTCATCAAGTTTGACG 559
Query 637 TGGGCAATGTAGTTATGGTCACTGGAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAGA 696
|||| || || || ||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 560 TGGGTAACGTTGTGATGGTGACTGGAGGCAGAAACAGAGGGCGTGTGGGTGTGATTAAGA 619
Query 697 ACCGTGAGAAA-CACAAGGGAAGCTTTGAAACCATCCACATTCAAGACTCAACAGGACAT 755
||||||| ||| || |||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 620 ACCGTGA-AAAGCATAAGGGAAGCTTTGAGACAATCCACATTCAAGACTCAACAGGGCAT 678
Query 756 GAGTTTGCTACAAGGTTGGGAAATGTGTTCACAATCGGGAAAGGAACAAAGCCATGGGTG 815
|||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct 679 GAGTTTGCCACAAGGTTGGGGAATGTGTACACAATCGGCAAAGGAACAAAGCCATGGGTG 738
Query 816 TCTCTACCAAAGGGCAAAGGTATTAAGTTGACCATCATTGAGGAAGCCAGGAAGAGACTT 875
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 739 TCTCTTCCAAAGGGCAAAGGTATTAAGCTGACCATCATTGAGGAAGCCAGGAAGAGACTT 798
Query 876 TCTGCTCAACAAGCT 890
|| | || ||||||
Sbjct 799 GCTTCCCAGCAAGCT 813
> AT5G58420.1 | Symbols: | Ribosomal protein S4 (RPS4A) family
protein | chr5:23619506-23621094 FORWARD LENGTH=1080
Length=1080
Score = 989 bits (535), Expect = 0.0
Identities = 706/790 (89%), Gaps = 6/790 (1%)
Strand=Plus/Plus
Query 104 AAACATGGCAAGAGGTTTGAAGAAGCATTTGAAGAGGATCAATGCTCCTAAGCATTGGAT 163
||||||||| || ||||||||||||||| |||||||| | ||||| ||||||||||||||
Sbjct 90 AAACATGGCGAGGGGTTTGAAGAAGCATCTGAAGAGGCTTAATGCGCCTAAGCATTGGAT 149
Query 164 GCTTGATAAACTTGGTGGTGCCTTTGCCCCCAAGCCGTCTTCTGGGCCACACAAGTCTAG 223
|||||| |||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||
Sbjct 150 GCTTGACAAACTTGGTGGTGCATTTGCCCCAAAGCCGTCTTCTGGACCACATAAGTCAAG 209
Query 224 GGAGTG-TTTACCCCTGGTTCTTATCATCAGGAACAGGTTGAAGTATGCCCTTACATACA 282
|||||| || ||||| || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 210 GGAGTGCCTT-CCCCTCGTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTTACCTACC 268
Query 283 GAGAAGTGATCTCGATCTTGATGCAAAGGCATATTCAAGTTGATGGGAAAGTGAGGACTG 342
| |||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 269 GTGAAGTGATTTCAATCTTGATGCAAAGGCATATCCAAGTTGATGGGAAAGTCAGGACGG 328
Query 343 ACAAGACTTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCAAAAACAAATGAGAACT 402
||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 329 ACAAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCTATCCCCAAGACCAATGAGAACT 388
Query 403 TCCGTCTTTTGTATGACACCAAGGGACGCTTCCGTCTCCACTCCATCAAGGATGAGGAAG 462
|||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 389 TCCGTCTTCTCTATGATACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGAAG 448
Query 463 CGAAGTTCAAGCTTTGCAAGGTGAGATCGATCCAGTTTGGTCAGAAGGGCATTCCGTT-C 521
| |||||||| ||||||||||| |||| ||||||||||| ||||| |||||||| || |
Sbjct 449 CAAAGTTCAAACTTTGCAAGGTTCGATCTATCCAGTTTGGACAGAAAGGCATTCC-TTAC 507
Query 522 TTGAACACATATGATGGTCGCACCATCCGTTACCCCGACCCGCTCATCAAGCCTAACGAC 581
||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 508 CTGAACACTTACGATGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCTAATGAC 567
Query 582 ACCATCAAGCTTGACCTTGAGGAGAACAAGATTGTGGAGTTCATTAAGTTTGATGTGGGC 641
||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct 568 ACCATCAAGCTCGACCTTGAGGCCAACAAGATTGTCGAGTTCATCAAGTTTGATGTTGGC 627
Query 642 AATGTAGTTATGGTCACTGGAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAGAACCGT 701
||||| || ||||| || ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 628 AATGTTGTGATGGTTACAGGAGGTAGAAACAGAGGGCGTGTTGGTGTGATTAAAAACCGT 687
Query 702 GAGAAACACAAGGGAAGCTTTGAAACCATCCACATTCAAGACTCAACAGGACATGAGTTT 761
||||| || |||||||||||||| || |||||||| ||||| ||||||||||||||||||
Sbjct 688 GAGAAGCATAAGGGAAGCTTTGAGACAATCCACATCCAAGATTCAACAGGACATGAGTTT 747
Query 762 GCTACAAGGTTGGGAAATGTGTTCACAATCGGGAAAGGAACAAAGCCATGGGTGTCTCTA 821
|| ||||||||||| ||||||| ||| || || ||||||||||||||||||||||||||
Sbjct 748 GCAACAAGGTTGGGTAATGTGTACACCATTGGCAAAGGAACAAAGCCATGGGTGTCTCTT 807
Query 822 CCAAAGGGCAAAGGTATTAAGTTGACCATCATTGAGGAAGCCAGGAAGAGACTTTCT-GC 880
|| |||||||||||||| ||| |||| ||||| ||||| ||||||||||| ||| || |
Sbjct 808 CCCAAGGGCAAAGGTATCAAGCTGACTATCATCGAGGAGGCCAGGAAGAGGCTTGCTAG- 866
Query 881 TCAACAAGCT 890
|||||| |||
Sbjct 867 TCAACAGGCT 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44658156683
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5