BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931619
Length=2327
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17580.1 | Symbols: | Polynucleotide adenylyltransferase fa... 3565 0.0
> AT2G17580.1 | Symbols: | Polynucleotide adenylyltransferase
family protein | chr2:7646463-7650320 FORWARD LENGTH=2572
Length=2572
Score = 3565 bits (1930), Expect = 0.0
Identities = 2198/2327 (94%), Gaps = 20/2327 (1%)
Strand=Plus/Plus
Query 3 ATGTTTTCGAGTCTTTGCCATGGCGGGTTTCATTAGGCGCAACGGAAACGTATTATTTCG 62
||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||
Sbjct 26 ATGTTTTCGAGTCTTTGCCATGGCGGGTTTCATTAAACGCAAAGGCAACGTATTTTTTCA 85
Query 63 TTCTCAAACCCTATCCGCTATCTACTCCAAGTTGCAGAGAAGTAACTGCACGCTTGCTGA 122
||||||| || || | ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 86 TTCTCAAGCCTTAGCTGCTGTCTACTCCAAGTTGCAGAGAAGTAATTGCACGCTTGCTGA 145
Query 123 GGGAGTCATGGAGAAGTGTTCTAGCATTCGTTC-AGTTATTGATGAAGATATAAATTCAG 181
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 146 GGGATTCATGGAGAAGTGTTCTAGCATTCG-TCAAGTTATTGATGAAGATATAAATTCAG 204
Query 182 TTGATACATCGAAGTGGAAGAAGGTACGAGCAAGTGATGCTGGAATTAGAAATTCAATGA 241
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 205 TTGATACATCTAAGTGGAAGAAGGTACGAGCAAGTGATGCTGGAATTAAAAATTCAATGA 264
Query 242 TCCCTGAATCCTCTATGAATGTCTTGAGACTCCTTAGACGGCAAGGTTTCGATGCATACC 301
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 265 TCCCTGAATCCTCTATGAATGTCTTGAGACTCCTTAGACGTCAAGGTTTCGATGCATACC 324
Query 302 TTGTTGGTGGATGTGTAAGGGATTTGATACTGCATAGAGTGCCAAAAGACTATGATGTGA 361
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 325 TTGTTGGTGGATGTGTAAGGGATTTAATACTGAATAGAGTGCCAAAAGACTATGATGTGA 384
Query 362 TCACTACAGCTGATCTTAAGCAGATCCGGCGGCTGTTTCATCGTGCTCAGGTTATTGGGA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 TCACTACAGCTGATCTTAAGCAGATCCGGCGGCTGTTTCATCGTGCTCAGGTTATTGGGA 444
Query 422 AACGGTTTCCTATTTGTCATGTGTGGATGGGAGGTTCGATAATTGAGGTGTCCAGTTTTG 481
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 445 AACGGTTTCCTATTTGTCATGTTTGGATGGGAGGTTCGATAATTGAGGTGTCCAGTTTTG 504
Query 482 ATACCGTGGCACACAGTGACAGTGAGCATGAAAATGATTTGGAGAAGTCTAAAGAGAAAT 541
||||||||| ||| ||||||| || | ||||||||||||||||||||||||||
Sbjct 505 ATACCGTGG--CAC----ACAGTGA-CA-G----TGATTTGGAGAAGTCTAAAGAGAAAT 552
Query 542 CTGGTGTTTCACTGGATACCAAGGCAAACAAAAATAACAGCCTCTTCACAATGTATTCTG 601
||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 553 CTGGTGTCTCACTGGATACCAAGGCAAACAAGAATAACAGCCTCTTCAAAATGTATTCTG 612
Query 602 GTTGGGATGTAAAAGACTGTAATCGTTGGAGGAATAGCTTGCAGCGGGATTTCACAATTA 661
||||||| | |||||||| || || ||||||||||||||||||||||||||||| ||||
Sbjct 613 GTTGGGACATTAAAGACTGCAAACGCTGGAGGAATAGCTTGCAGCGGGATTTCACTATTA 672
Query 662 ACAGTTTATTCTATAATCCCTTTGAGTTAAAAATTTATGACTATGCCAATGGAATGGAAG 721
|||| || ||||||||||||||||| || | |||||||||||| ||||||||||||||||
Sbjct 673 ACAGCTTGTTCTATAATCCCTTTGATTTTACAATTTATGACTACGCCAATGGAATGGAAG 732
Query 722 ACTTGACGGATCTTAAGCTTCGTACACTTGTCCCTGCACATTTGTCATTCAAGGAAGATT 781
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 733 ACTTGACGGATCTTAAGCTTCGTACACTTGTCCCTGCACATTTATCATTCAAGGAAGATT 792
Query 782 GTGCTAGAATTCTGAGGGGGTTAAGAATTGCAGCACGATTGGGTCTATCATTGTCAAAGG 841
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GTGCTAGAATTCTTAGGGGGTTAAGAATTGCAGCACGATTGGGTCTATCATTGTCAAAGG 852
Query 842 ATGTTGAGACTGCAATACCTGAATTTGTATCTTCCGTTGCAAATTTGGACCAGTTTAGAT 901
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 853 ATGTTAAGACTGCAATACCTGAATTTGTATCTTCCGTTGCAAATCTGGACCAGTTTAGAT 912
Query 902 TAATCATGGAAATGAATTATATGCTTGCGTATGGAGCTGCTGCGCCTTCCATCCTTCTTC 961
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 913 TAATCATGGAAATGAATTATATGCTTGCGTATGGAGCTGCTGCGCCGTCCATCCTTCTTC 972
Query 962 TCATGAAGTTCAAACTACTTCACGTGTTACTTCCTTTTCAGGCAGCTTACCTGGATCAAG 1021
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 973 TCATGAAGTTCAAACTACTTCATGTGTTACTTCCTTTTCAGGCAGCTTACCTGGATCAAG 1032
Query 1022 CTAGTGAAACATCTCTATCAAGTTCCTTGATGCTAGTGAGATTATTCTCCAATATGGATA 1081
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1033 CTAGTAAAACATCTCTATCAAGTTCCTTGATGCTAGTGAGGTTATTCTCCAATATGGATA 1092
Query 1082 AATTGGTTTCCTGCGATCAACCTGCTGACCCCAAACTATGGATTGCAGTGTTGGCCTTTC 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1093 AATTGGTTTCCTGCGATCAACCTGCTGACCCCAAACTATGGATTGCAGTGTTGGCTTTTC 1152
Query 1142 ACATTGCACTAGTGCGTAACCCCCAGGAGGCTATTGTGGTGCGTGCTTTCGCCGCTTTGC 1201
||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||
Sbjct 1153 ACATTGCACTAGTGCGTAACCCCCAAGAGGCTATTGTGGTGCGCGCTTTTGCTGCTTTGC 1212
Query 1202 TCTACCATGGAAACTGGAACAAAGCTGTCAAATTTGCTAGAGAACATGAAACTTCAGT-A 1260
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
Sbjct 1213 TCTACCATGGAAACTGGAGCAAAGCTGTCGAATTTGCTAGAGAACATGAAACTTCAGTGA 1272
Query 1261 GTCGGATACGCTCCTGAGGTATCTAAATTTTCGAGAAAGAGATCTGATGAAGATCTTGCA 1320
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1273 -TCGGATACGCTCCTGAGGTATCTAAATCTTCGAGAAAGAGATCTGATGAAGATCTTGCA 1331
Query 1321 GAAGCAGTTTCAGAATTCACATGTCTTTTAAAAGATACTCAATACGTTCTGACTGATATA 1380
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1332 GAAGCAGTTTCAGAATTCACATGTCTATTAAAAGATACTCAATACGTTCTGACTGATAAA 1391
Query 1381 GAGGCTCTCCGCGAAGCCCTATACCTATACCCGGATTTCAAATTCTCTGGTCTGGTGTTT 1440
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1392 GAGGCTCTCCGGGAAGCCCTATACCTATACCCGGATTTCAAATTCTCTGGTTTGGTGTTT 1451
Query 1441 ATACCGAAGAAAAAGGCGAGAGATGTAGCAGAAGGGTTTGCGAGATTGAGTGATGTTGAA 1500
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1452 ATACCGAAGAAAAAGGGGAGAGATGTAGCAGAAGGGTTTATGAGATTGAGTGATGTGGAA 1511
Query 1501 TCATACGAAAGC-AAAAAGGAGGGAATCTCTATTGACTATCTCTCACTTGGGAAGGGAAA 1559
||||| |||||| |||||| ||||| ||||||| |||||| ||| ||||||||||||||
Sbjct 1512 TCATATGAAAGCCAAAAAG-AGGGATTCTCTATCGACTATGTCTTGCTTGGGAAGGGAAA 1570
Query 1560 TCCATGCGAAGTAAGATTTGTTCTTGGCAAAATCATTCTGGACACCATTACAGAAGGTAT 1619
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1571 TCCATGCGAAGTAAGATTTGTTCTTGGCAAAATCATTCTGGACACCATCACAGAAGGTAC 1630
Query 1620 CGTCATTGAACCTCTAAACTCTGTCAAGAAGAAGCAGAGCACCAGTAATCAAATTGTTCC 1679
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1631 CGTCATCGAACCTCTAAACTCTGTCAAGAAGAAGCAGAGCACCAGAAATCATATTGTTCC 1690
Query 1680 AGCAGCTTGCTTGGAGAAGAAGGATGAGTTGTTCGTTTCTAAATCCTCAAAGGAGGATAA 1739
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1691 AGCGGCTTGCTTGGAGAAGAAGGATGAGTTGTTCGTTTCTAAATCGTCAAAAGAGGATAA 1750
Query 1740 CAACAATCACACTCCAGTCTATGACTCAAATGCATCATCTGTTCTGAAGATTTTGAAGAG 1799
||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1751 CAACAATCAAACTCCAGTCCATGACTCAAATGCATCATCTGTTCTAAAGATTTTGAAGAG 1810
Query 1800 GACGAGAGAAGACAGTGAGCAGAAGA-TCGACCAAGAGACCGAGGTATGTCCAAGCACCC 1858
|||||||||||||||||||||||| | | |||||||||||||||||||||||||| ||||
Sbjct 1811 GACGAGAGAAGACAGTGAGCAGAACAAT-GACCAAGAGACCGAGGTATGTCCAAGAACCC 1869
Query 1859 TCTCTGGTCCAGCAAAGAATCAAGATCAGTCGGTAGTTCAAAAGCTGAAAAGACGGCGTA 1918
|||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||
Sbjct 1870 CCTCTGGTCCAGCAAAGAATCAAGATCAGTCTGTAGTTCAAATGCTTAAAAGACGGCGTA 1929
Query 1919 GCAAAGAAGCACCAGTCTCTGAGCCGCCTAAGCAAAAGACTTCAAAGAGGTCGAGATTAG 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1930 GCAAAGAAGCACCAGTCTCTGAGCCGCCTAAGCAAAAGACTTCAAAGAGGTCGAGATCAG 1989
Query 1979 ATGACCAAGAGGCGGTTGGAAGTATCTCTGTTCCAGCAAAAAATCAGCATCAGAGTAACA 2038
||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 1990 ATGACCAAGAGGCGGTTGGAAGTCTCTCTGTTCCAGCAAAGATTCAGCATCAGAGTAACA 2049
Query 2039 AGCATGACACAAATGCACCGATCTGTGAGCCGCCTAAACAAAAGACTTCAAAGAACCGTT 2098
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 2050 AGCATGACACAAATGCACCGATCTGTGAGCTACCTAAGCAAAAGACTTCAAAGAACCATT 2109
Query 2099 CGAAGGAGACACAAAAAGTGAAACACAACGACTTGCCTACGAAGGAGATTCAAGAAGCAA 2158
|||||||| ||| ||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 2110 CGAAGGAGTCACGAAAAGTGAAACACAACGACTTGCCTGTGAAGGAGATTAAAGAAGCAA 2169
Query 2159 AACACGGCTTGGTGTCTGATAAATCTATGAGTGATCTTCTAAAAGTTCTTGAGAAATCAA 2218
|||| ||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 2170 AACAAGGCTTTGTTTCTGACAAATCTATGAGTGATCTTCTACAAGTTCTTGAGAAATCAA 2229
Query 2219 GTCAGCAAGTGTCTAGCAAAGAGGAGAGCGACTCCTTATTATCAGAGAAGACGAAGAGAC 2278
||||||||||||||||||||||||||| | |||| |||| ||||||||||||||| ||||
Sbjct 2230 GTCAGCAAGTGTCTAGCAAAGAGGAGAACAACTCTTTATCATCAGAGAAGACGAATAGAC 2289
Query 2279 CGAGAAATCTCTCAAGTCTCTTTAGGTGAAATGGTTACCCTACTGGT 2325
||||||| |||||||||||||| |||||||||||||||| || ||||
Sbjct 2290 CGAGAAAACTCTCAAGTCTCTTCAGGTGAAATGGTTACCTTATTGGT 2336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115511454045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5