BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931622
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17620.1 | Symbols: CYCB2;1 | Cyclin B2;1 | chr2:7664103-766... 1790 0.0
AT4G35620.1 | Symbols: CYCB2;2 | Cyclin B2;2 | chr4:16901621-16... 885 0.0
> AT2G17620.1 | Symbols: CYCB2;1 | Cyclin B2;1 | chr2:7664103-7666522
FORWARD LENGTH=1612
Length=1612
Score = 1790 bits (969), Expect = 0.0
Identities = 1184/1285 (92%), Gaps = 25/1285 (2%)
Strand=Plus/Plus
Query 38 AACCCAC-T--ACAACGATTCTTCaagatgaaacaagaagtagaaaattcggacaagaga 94
||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 AACCCACTTCAACGACGATTCTTCAAGATGAAACAAGAAGTAGAAAATTCGGACAAGAGA 155
Query 95 tgaagaaagagaagagaagagTGTTGGGTGTGATTAATCAGAATCTTGTTGGTGCAAAAG 154
|||||| |||||||||||||||||| |||||||||| |||||||| | |||||||| ||
Sbjct 156 TGAAGAGGGAGAAGAGAAGAGTGTTGCGTGTGATTAACCAGAATCTCGCTGGTGCAAGAG 215
Query 155 TTTATCCTTGTGTTGTCAACAAGAGAGGAAGCTTATTGTTATCTAATAAGC---AAGAAG 211
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 216 TTTATCCTTGTGTTGTCAACAAGAGAGGAAGCTTATTG---TCTAATAAGCAAGAAGAAG 272
Query 212 AAGAAGGATGTCAAGAGAAGAAGTTTGATTCTTTGCGTCCTTCAATTACAAGATCTGGAG 271
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 273 AAGAAGGATGTCAAAAGAAGAAGTTTGATTCTTTGCGTCCTTCAGTTACAAGATCTGGAG 332
Query 272 TTGAAGAGGAGACTAAGAAGAAGCTGAAGCCATCTGTTCCAAGTAGTGCAAATGGTTTCG 331
|||| || |||||||| |||||||||||||| || ||||| | ||||| || | ||||
Sbjct 333 TTGAGGAAGAGACTAACAAGAAGCTGAAGCCCTCAGTTCC-A--AGTGCTAACGACTTCG 389
Query 332 GTGACTGTATATTTGTTGATGAAGAGGAAGCTACATTGGACCATCCGATGCCAATGTCGC 391
|||| ||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||||
Sbjct 390 GTGATTGTATATTTATTGATGAGGAGGAAGCTACATTGGACCTTCCAATGCCAATGTCGC 449
Query 392 TTGAGAGGCCGTTCACAAGCAT-CATTGAAGCTGACCCAATGGAGGAAGTTGAGATGGAG 450
|| || | | || ||| |||||||||||| |||||||| |||||||||||||||
Sbjct 450 TT--GA----G---A-AACCATACATTGAAGCTGATCCAATGGAAGAAGTTGAGATGGAG 499
Query 451 GATGTAACAGTGGAAGAACCAATCTTGGATATCGATGTCTCAGA-TGCGAAGAACTCACT 509
|||||||||||||||||||| ||| ||||||||||||||| ||| | |||||||||| ||
Sbjct 500 GATGTAACAGTGGAAGAACCGATCGTGGATATCGATGTCTTAGACT-CGAAGAACTCGCT 558
Query 510 TGCAGCTGTTGAATATGTCCAAGATCTTTACGCATTTTACAGAACAATGGAGAGCTTTAG 569
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 559 TGCGGCTGTTGAATATGTTCAAGATCTTTACGCATTTTACAGAACAATGGAGAGATTTAG 618
Query 570 TTGTGTTCCAGTAGATTATATGATGCAACAAATAGACTTAAACGAGAAGATGAGAGCAAT 629
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 619 TTGTGTTCCAGTAGACTATATGATGCAACAAATCGACTTAAACGAGAAGATGAGAGCAAT 678
Query 630 ACTAATTGACTGGTTAATCGAGGTGCATGATAAGTTTGATCTGATGAACGAGACACTGTT 689
|||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 679 ACTAATCGACTGGTTAATCGAGGTACATGACAAGTTTGATCTGATAAACGAGACACTGTT 738
Query 690 TCTGACAGTCAATCTGATAGATAGATTCTTGGCCAAGCAAGCTGTTATGAGAAAGAAGCT 749
||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 739 TCTGACAGTGAATCTGATAGATAGATTCTTGTCCAAGCAAAATGTTATGAGAAAGAAGCT 798
Query 750 TCAGCTTGTAGGGTTAGTGGCTTTGCTCTTAGCTTGCAAGTACGAAGAGGTTTCGGTTCC 809
|||||||||||||||||| |||||||| |||||||| ||||| || ||||||||||||||
Sbjct 799 TCAGCTTGTAGGGTTAGTAGCTTTGCTGTTAGCTTGTAAGTATGAGGAGGTTTCGGTTCC 858
Query 810 TGTTGTCGAAGATTTAGTACTCATTTCAGACAAAGCTTATACGAGGAACGATGTTCTAGA 869
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 859 TGTTGTCGAAGATTTAGTACTCATTTCGGACAAAGCGTATACGAGGAACGATGTTCTAGA 918
Query 870 GATGGAGAAAACAATGTTGAGTACTTTGCAATTCAATATCTCGTTGCCGACACAATACCC 929
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 919 GATGGAGAAAACAATGTTGAGTACTTTGCAATTCAATATCTCGTTACCGACACAATACCC 978
Query 930 TTTCTTGAAAAGATTTCTCAAGGCAGCTCAAGCAGACAAGAAGTGTGAGGTCTTGGCATC 989
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 979 GTTCTTGAAAAGATTCCTCAAGGCAGCTCAAGCAGACAAGAAGTGTGAGGTCTTGGCGTC 1038
Query 990 GTTCTTGATCGAGCTTGCGCTTGTGGAGTATGAGATGCTTCGGTTTCCACCATCATTACT 1049
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1039 GTTCTTGATCGAGCTTGCCCTTGTGGAGTACGAGATGCTTCGGTTTCCACCATCATTACT 1098
Query 1050 AGCTGCCACATCTGTGTACACTGCTCAATGTACACTTCATGGTTTCAGGCAATGGAACAG 1109
||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct 1099 AGCTGCCACATCTGTGTACACTGCTCAATGTACACTTGATGGTTCCAGGAAATGGAACAG 1158
Query 1110 TACATGTGAATTCTATTGTCATTACTCTGAAGATCAGCTCATGGAATGTTTGCGGAAACT 1169
||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||
Sbjct 1159 TACATGTGAATTCCATTGTCATTACTCTGAAGACCAGCTCATGGAATGTTCACGGAAGCT 1218
Query 1170 GGTGAGTCTTCATCAGAGGGCGGCGACAGGGAACTTGACAGGAGTATATAGGAAGTACAA 1229
||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1219 GGTGAGTCTGCATCAGAGGGCGGCGACAGGAAACTTAACAGGAGTATATAGGAAGTACAG 1278
Query 1230 CACATCCAAATTTGGGTACATAGCAAAATGTGAAGCTGCACACTTTCTATTGTCTGAGTC 1289
|||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1279 CACAAGCAAATTTGGTTACATAGCAAAATGTGAAGCTGCACACTTTCTAGTGTCTGAGTC 1338
Query 1290 TCATCATCCTTAAGCCAAAAGAACA 1314
||||||| ||||| ||||||| |||
Sbjct 1339 TCATCATTCTTAATCCAAAAGGACA 1363
> AT4G35620.1 | Symbols: CYCB2;2 | Cyclin B2;2 | chr4:16901621-16903920
FORWARD LENGTH=1567
Length=1567
Score = 885 bits (479), Expect = 0.0
Identities = 1037/1294 (80%), Gaps = 87/1294 (7%)
Strand=Plus/Plus
Query 38 AACCCACTACA-ACGATTCTTCaagatga--a-aca-agaagtagaaaattcggacaaga 92
|||||| |||| | ||||||||||||||| | | | ||||| ||||||||||| |||
Sbjct 164 AACCCATTACAGA-GATTCTTCAAGATGATGATA-AGAGAAGCAGAAAATTCGGTGTAGA 221
Query 93 gatgaagaaagagaagagaagagTGTTGGGTGTGATTAATCAGAATCTTGTTGGTGCAAA 152
|||||||| | |||| || |||| ||||||||||||||||| ||||| |||||||||||
Sbjct 222 GATGAAGAGACAGAACAGGAGAGCATTGGGTGTGATTAATCACAATCTCGTTGGTGCAAA 281
Query 153 AGTTTATCCTTGTGTTGTCAACAAGAGAGGAAGCTTATTGTTATCTAATAAGCAAGAAGA 212
|| ||||||||||||||| ||||||||| || || |||||| | || || || |
Sbjct 282 AGCTTATCCTTGTGTTGTTAACAAGAGAAGAGGC------TTATCTCA-GAG-AA-AACA 332
Query 213 AGAAGGATGTCA-AGAGAAGAAGTTTGATTCTTTGCGTCCTTCAATTACAAGATCTGGAG 271
|||| | ||| | | |||||||| ||||||| |||| ||| |||||| |||||||| ||
Sbjct 333 AGAAAGCTGTGACA-AGAAGAAGCTTGATTCATTGCATCCGTCAATTTCAAGATCT-CAG 390
Query 272 TTGAAGAGGAGACTAAGAAGAAGCTGAAGCCATCT-GTTCCAAG--TAGTGCAAATG-GT 327
| | | |||||| ||||||||||| ||| | | | || | ||| | || |
Sbjct 391 --G-A-A-GAGACT---AAGAAGCTGAAACCAAGTGGAAACGAGTTTGGTG--ATTGCAT 440
Query 328 -TTCGGTGACTGTATATTTGTTGATGAA-GAGGAAGCTACATTGGACCATCCGATGCCAA 385
||| ||| || | | | || ||| || |||| |||||||||||| || |||||||
Sbjct 441 ATTCATTGA-TGAAGAAGAGGAGAAGAATGAAGAAGTTACATTGGACCAACCTATGCCAA 499
Query 386 TGTCGCTTGAGAGGCCGTTCACAAGCAT-CATTGAAGCTGACCCAATGGA-G--GAAGTT 441
|||| ||| || | | || ||| ||||||| ||| |||||||| | ||||||
Sbjct 500 TGTC-ATTG-GA-G--G-----AACCATACATTGAATTTGATCCAATGGAGGAAGAAGTT 549
Query 442 GAGATGGAGG--ATGTAA-CAG---TGGAAGAACCAATCTTGGATATCGATGTCTCA-GA 494
|||||||||| ||| || || ||||||||| | |||||||| || | | | ||
Sbjct 550 GAGATGGAGGATATGGAAGAAGAACAAGAAGAACCAGTTTTGGATATAGACGAAT-ACGA 608
Query 495 TGCGAAGAACTCACTTGCAGCTGTTGAATATGTCCAAGATCTTTACGCATTT-TACAG-A 552
||| || ||||| ||||||||||||||||| |||||||||||||||| |||| ||| | |
Sbjct 609 TGCAAACAACTCTCTTGCAGCTGTTGAATACGTCCAAGATCTTTACG-ATTTCTACCGTA 667
Query 553 ACAATGGAGAGCTTTAGTTGTGTTCCAGTAGATTATATGATGCAACAAATAGACTTA-AA 611
| || ||||| ||||| |||||||| ||||||| ||| |||||| | || || |
Sbjct 668 A-AACCGAGAGATTTAGCTGTGTTCCTCTAGATTACATGGCGCAACAGTTTGA--TATAT 724
Query 612 C-GAGAAGATGAGAGCAATACTAATTGACTGGTTAATCGAGGTGCATGATAAGTTTGATC 670
| || || |||||||||||||| ||||||||| | |||||||| |||||||||||||| |
Sbjct 725 CTGACAAAATGAGAGCAATACTTATTGACTGGCTCATCGAGGTACATGATAAGTTTGAGC 784
Query 671 TGATGAACGAGACACTGTTTCTGACAGTCAATCTGATAGATAGATTCTTGGCCAAGCAAG 730
|||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 785 TGATGAACGAGACATTGTTTCTAACAGTCAATCTGATAGATAGATTCTTGTCCAAGCAAG 844
Query 731 CTGTTATGAGAAAGAAGCTTCAGCTTGTAGGGTTAGTGGCTTTGCTCTTAGCTTGCAAGT 790
||||| |||||||||||||||||||| || ||||| || |||||||||||||||||||
Sbjct 845 CTGTTGCAAGAAAGAAGCTTCAGCTTGTTGGTTTAGTTGCATTGCTCTTAGCTTGCAAGT 904
Query 791 ACGAAGAGGTTTCGGTTCCTGTTGTCGAAGATTTAGTACTCATTTCAGACAAAGCTTATA 850
||||||||||||| || ||| |||| |||||||| ||| ||||||| |||||||||||||
Sbjct 905 ACGAAGAGGTTTCAGTACCTATTGTTGAAGATTTGGTAGTCATTTCGGACAAAGCTTATA 964
Query 851 CGAGGAACGATGTTCTAGAGATGGAGAAAACAATG-TTGAGTACTTTGCAATTCAATATC 909
|||||| ||||||| |||| |||||||| | ||| || ||||||||||||||||||||
Sbjct 965 CGAGGACCGATGTTTTAGAAATGGAGAAGATTATGCTT-AGTACTTTGCAATTCAATATG 1023
Query 910 TCGTTGCCGACACAATACCCTTTCTTGAAAAGATTTCTCAAGGCAGCTCAAGCAGACAAG 969
||||| || || ||||||||||||||||| || || ||||||||||||||| ||||||||
Sbjct 1024 TCGTTACCAACGCAATACCCTTTCTTGAAGAGGTTCCTCAAGGCAGCTCAATCAGACAAG 1083
Query 970 AAG-TGTGAGGTCTTGGCATCGTTCTTGATCGAGCTTGCGCTTGTGGAGTATGAGATGCT 1028
||| | |||| ||||||| ||||||||||| |||||||| |||||||| || || ||| |
Sbjct 1084 AAGCT-TGAGATCTTGGCGTCGTTCTTGATTGAGCTTGCTCTTGTGGACTACGAAATGGT 1142
Query 1029 TCGGTTTCCACCATCATTACTAGCTGCCACAT-CTGTGTACACTGCTCAATGTACACTTC 1087
||||| ||||||||| ||||| || ||||| | | |||||||| |||||||||||| | |
Sbjct 1143 TCGGTATCCACCATCGTTACTCGCCGCCAC-TGCCGTGTACACAGCTCAATGTACAATCC 1201
Query 1088 ATGGTTTCAG-GCAATGGAACAGTACATGTGAATTCTATTGTCATTACTCTGAAGA-TCA 1145
|||| ||||| | |||||||||| || ||||||||| ||||||| |||||||| || |||
Sbjct 1202 ATGGCTTCAGTG-AATGGAACAGCACTTGTGAATTCCATTGTCACTACTCTGA-GAATCA 1259
Query 1146 GCTCATGGAATGTTTGCGGAA-ACTGGTGAGTCTTCATCAGAGGGC-GGCGACAGGGAA- 1202
||| | ||||||| | ||| | ||||||| || ||||||| || || ||| | ||
Sbjct 1260 ACTCCTAGAATGTT-GTAGAAGAATGGTGAGACTACATCAGAAAGCTGG-GACTGATAAA 1317
Query 1203 CTTGACAGGAGTATATAGGAAGTACAACACATCCAAATTTGGGTACATAGCAA-AATGT- 1260
|| ||||||||| |||| || |||| | | |||||||| || |||||||||| || ||
Sbjct 1318 CTA-ACAGGAGTACATAGAAAATACAGCTCCTCCAAATTCGGATACATAGCAACAAAGTA 1376
Query 1261 -GAAGCTGCACACTTTCTAT-TGTCTGAGTCTCA 1292
||||||||||||||||| | |||| || |||||
Sbjct 1377 TGAAGCTGCACACTTTCT-TGTGTCAGATTCTCA 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210507955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5