BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931626

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17660.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fam...   387    3e-107


> AT2G17660.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) family 
protein | chr2:7673282-7673712 FORWARD LENGTH=431
Length=431

 Score =  387 bits (209),  Expect = 3e-107
 Identities = 233/245 (95%), Gaps = 0/245 (0%)
 Strand=Plus/Plus

Query  1    TTGTTACTTTCTTGATCGAAAATGGCATCGAATGAAGCTGGAAGGGCATTGCCGAAATTC  60
            ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct  57   TTGTTACTTTCTTGATCGATAATGGCGTCGAATGAAGCTGGAAGGGCATTGCCGAAATTC  116

Query  61   GGGGAATGGGATGTGAATGATCCGGCGACAGCGGATGGATTCACGGTGATATTTAGCAAA  120
            ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct  117  GGGGAATGGGATGTGAATGATCCAGCGACGGCGGATGGATTCACGGTGATATTCAGCAAA  176

Query  121  GCCGGTGAAGATAAAAAGACTGGACGGAGTTCGACGAAGACAAATTCTCAGAGGAAACAA  180
            |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct  177  GCCGGTGAAGATAAAAAGACGGGACGGAGTTCGACGAAGACGAATTCACAGAGGAAACAA  236

Query  181  GACGGTGATAAACCAGCGGTCAAGAAATGGCTCTGTTTCACTTTTACTTGATCttttttt  240
            || |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct  237  GATGGTGATAAACCAGCGGTCAAGAAATGGCTCTGTTTCACTTTTGCTTAATCTTTTTTT  296

Query  241  ATTGT  245
             ||||
Sbjct  297  TTTGT  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11410779023


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5