BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931629
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17680.1 | Symbols: | Arabidopsis protein of unknown functi... 1386 0.0
AT4G35690.1 | Symbols: | Arabidopsis protein of unknown functi... 211 9e-54
AT4G35710.1 | Symbols: | Arabidopsis protein of unknown functi... 147 3e-34
> AT2G17680.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr2:7679008-7680378 FORWARD LENGTH=1371
Length=1371
Score = 1386 bits (750), Expect = 0.0
Identities = 869/927 (94%), Gaps = 5/927 (1%)
Strand=Plus/Plus
Query 1 AACAACAAAGCTCAAACCAATATGGCGATGAAGATGATCAAGAACCATGTAAGATCTATT 60
||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 213 AACAACAAAACTCAAACCAATATGGTGATGATGATGATCAAGAACCATGTAAGATCTATA 272
Query 61 AGCTTACCATCAAGATCTCATCCTAGCACCGCAGCGATTGAGGAGTCGCTGGAAAAATTT 120
||||||| ||||||||||||||||||||| |||||||| ||||||||||| || ||||||
Sbjct 273 AGCTTACAATCAAGATCTCATCCTAGCACAGCAGCGATCGAGGAGTCGCTCGACAAATTT 332
Query 121 ATTATCACTATGAACACGTCGACAATGACGTCGTCTAAGTCCGTTTACTCCGGTTTATCG 180
|||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||||||
Sbjct 333 CTTATCACTATGAACACGTCGACAATGGCGTCGTCTGAGTCGGTTCACTCCGGTTTATCG 392
Query 181 GGGCTGGAGGATCTGTACGACTGTACCGAAGATCTTCTTAAGATGGGTTCGACGCAAAGA 240
||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 393 GGGTTGGAGGATCTGTACGACTGTTCGGAAGATCTTCTGAAGATGGGTTCGACGCAAAGG 452
Query 241 GTGTTGTCGTTTAATGATGagaagaagaagaagaagaagaagaTGATGAAGGGAGAGTTT 300
||||||||||||| ||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct 453 GTGTTGTCGTTTAGTGATGAGAAGAAGAAGAAGAAGAGGAA-A-G-TGAAGGGAGAGTTT 509
Query 301 ATGGAGGAAATGCTTGATGGTTCGTTGAGGCTAATGGATATATGCAACGTCTCGAGGGAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 ATGGAGGAAATGCTTGATGGTTCGTTGAGGCTAATGGATATATGCAACGTCTCGAGGGAT 569
Query 361 CTCATGGTTGAGACTCATGAGCATGTTCTTGGTCTTCAGTCTTGTGTTAGGAGAAGGAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 CTCATGGTTGAGACTCATGAGCATGTTCTTGGTCTTCAGTCTTGTGTTAGGAGAAGGAAA 629
Query 421 GATTTCGATGTCTCGGGCTATGTCGGATTTAGGAAGAATATGAGGAAAGAAGTGAAGAAG 480
||| |||| |||||||| |||||||| |||||||| || |||||||||||||||||||||
Sbjct 630 GATGTCGACGTCTCGGGATATGTCGGGTTTAGGAAAAACATGAGGAAAGAAGTGAAGAAG 689
Query 481 CTTCTTGGATCGTTAAAGAACATTAATGTAGGGTTAGTAATGAAAGATCATGGTTATGAT 540
||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 690 CTTCTTGGATCTTTAAAGAACATTAATGTAGGGTTAGTGATGAGAGATCATGGTTATGAT 749
Query 541 CAAGACGGTGATATTCATTTATTGGCCGTGATTCATGCAATGAGACGTGTCGTTTCA-AT 599
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 750 CAAGACGGTGATATTCATTTCTTGGCCGTGATTCATGCAATGAGACGTGTCGTTT-ATAT 808
Query 600 GACAGTTTCGGTCTTGAAGTCGTTCTTGGAGTTCTTGTCGGGACGACAAAACGGGAATGA 659
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 809 GACAGTTTCGGTCTTAAAGTCTTTCTTTGAGTTCTTGTCGGGACGACAAAACGGGAACGA 868
Query 660 CATAAGGAGCAAATTGGCTTTGGTCCTCATGAACAAGAAGTTTCATGATCACGATAAGAT 719
| |||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 869 CGTAAGGAGCAAGTTGGCTTTAGTTCTCATGAACAAGAAGTTTCATGATCACGATAAGAT 928
Query 720 GGTCAAAAATGAGTTGGAGAATGTAGATTCAGCGATTTGTGGAGATTCTATCTCTTATGA 779
||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 929 GGTCAAAAACGAGTTGGAGAATGTAGATTCCGCGATTTGTGGAGATTCTATCTCTCATGA 988
Query 780 TGATCTTCATGTGAAGCTTGAGGAAGTTGAGGTATGGATTCGAAGGTTCGAGAAGAGTCT 839
||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 989 TGATCTTCATGAGAAGCTTGAGGAAGTTGAGGTATGGATTGGAAAATTCGAGAAGAGTCT 1048
Query 840 AGAAGAATTATTTCGAGGGATGATTAGAACACGAGCCTTGCTTCTCAACATAATCTCTCA 899
|||| ||| ||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct 1049 TGAAGGATTGTTTCGAGGGTTGATTAAAACACGAGCCTCGCTTCTCAACATAATCTCTCA 1108
Query 900 ATAGGTGTATATGTAATATTGTCATCT 926
|||||||| ||||||||||||||||||
Sbjct 1109 ATAGGTGTTTATGTAATATTGTCATCT 1135
> AT4G35690.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr4:16921803-16922963 FORWARD LENGTH=1161
Length=1161
Score = 211 bits (114), Expect = 9e-54
Identities = 484/651 (74%), Gaps = 71/651 (11%)
Strand=Plus/Plus
Query 295 GAGTTTATGGAGGAAATGCTTGATGGTTCGTTGAGGCTAATGGATATATGCAACGTCTCG 354
|||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 321 GAGTTTATGGAGGAGATGCTTGACGGTTCGTTGAGGCTAATGGATATATGCAGTGTCTCG 380
Query 355 AGGGATCTCATGGTTGAGACTCATGAGCATGTTCTTGGTCTTCAGTCTTGTGTTAGGAGA 414
|||||||||||||| |||||||| |||||||||| |||| |||| || ||||| ||||||
Sbjct 381 AGGGATCTCATGGTGGAGACTCAAGAGCATGTTCGTGGTGTTCAATCATGTGTCAGGAGA 440
Query 415 AGGAAAG-ATT-----------------TCGATGTC----TCG-GGC-TATGTCGGATTT 450
| ||||| | | |||||||| ||| || ||||||||||||
Sbjct 441 AAGAAAGTAGTCGGAGGAGAAGACCAACTCGATGTCGCCGTCGCGGGGTATGTCGGATTT 500
Query 451 AGGAAGAATATGAGGAAAGAAG-TGAAGAAGCTTCTTGGATCGTTAAAGAACATTAATGT 509
|| ||||| ||||| ||||||| | |||| |||||||||||| || ||||||||| |||
Sbjct 501 AGAAAGAACATGAGAAAAGAAGCT-AAGAGGCTTCTTGGATCTTTGAAGAACATTGATGG 559
Query 510 AGGGTTA-GTA-ATGAAAGATCA-TGGTTA-TGATCAAG-ACGGTGATATTCAT-TTATT 563
||| ||| || || | |||| | || || | | | | | || | ||| || |
Sbjct 560 AGGTTTAAGTTCATCATC-ATCAGTAAATAATGGTGA-GCAAGAAGA-A--CATCTTGT- 613
Query 564 GGCCGT-GATTCATGCAATGAGACGTGTCGTTTCAATGA-CAGTTTCGGTCTTGAAGTCG 621
|| || | | | || ||||||| || ||||| | | | || |||| |||| ||||
Sbjct 614 GGTGGTTG-TAGACGCCATGAGACAAGTAGTTTCCGTTAGC-GTCGCGGTGTTGAGGTCG 671
Query 622 TTCTTGGAGTTCTTGTCGGGACGAC-A-AAACGGGAATGACAT-AAGGAGCAAATTGGCT 678
|| ||||| ||||| || ||||||| | ||| | || ||| ||| ||||| |||||
Sbjct 672 TTTTTGGAATTCTTATCCGGACGACGACAAA-GT-AA---CATTAAG-AGCAAGCTGGCT 725
Query 679 TTGGTCCTCATGAACAAGAAGTTTCATGATCACGATAAGATGGTCAAAAATGAGTTGGAG 738
| ||| || | ||| |||||| |||| || || ||| ||| || |||||||||
Sbjct 726 TCGGTACTAAAGAAAAAGAAGGTTCACCATGTTGAGGAGAC---CAAGAACGAGTTGGAG 782
Query 739 AATGTAGATTCAGCGATTTGTGGAGATTCTAT-CTCTTATGATGATCTTCATGTGAAGCT 797
||| | ||| | ||| | | ||||| | ||| || ||||||| || ||||||
Sbjct 783 AATTTGGAT-CT-CGA---G---ATATTCTGTTCTCGTA--ATGATCTACAAAAGAAGCT 832
Query 798 TGAGGAAGTTGAGGTATG-G-ATTCGAAGG-TTCGAGAAGAGTCTAGAAGAATTATTTCG 854
||||||||||||| ||| | ||| || || |||||||||| ||||||| | |||||||
Sbjct 833 TGAGGAAGTTGAG--ATGAGCATT-GATGGATTCGAGAAGAAACTAGAAGGACTATTTCG 889
Query 855 AGGGATGATTAGAACACGAGCCTTGCTTCTCAACATAATCTCTCAATAGGT 905
| || |||| ||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 890 AAGGTTGATAAGAACACGAGCCTCGCTTCTCAACATAATATCTCATTAGGT 940
> AT4G35710.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr4:16925301-16926152 FORWARD LENGTH=852
Length=852
Score = 147 bits (79), Expect = 3e-34
Identities = 108/122 (89%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 301 ATGGAGGAAATGCTTGATGGTTCGTTGAGGCTAATGGATATATGCAACGTCTCGAGGGAT 360
|||||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||
Sbjct 241 ATGGAGGAAATGCTTGATGGTTCGTTGAGGCTGATGGATATCTGCAGCGTCTCAAGGGAT 300
Query 361 CTCATGGTTGAGACTCATGAGCATGTTCTTGGTC-TTCAGTCTTGTGTTAGGAGAAGGAA 419
|| ||||| |||||||| |||||||||| ||| | ||||||| | |||||| |||| |||
Sbjct 301 CTAATGGTGGAGACTCACGAGCATGTTCGTGG-CGTTCAGTCATATGTTAGAAGAAAGAA 359
Query 420 AG 421
||
Sbjct 360 AG 361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45260966447
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5