BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931636
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17730.2 | Symbols: NIP2 | NEP-interacting protein 2 | chr2:... 1125 0.0
AT4G35840.1 | Symbols: | RING/U-box superfamily protein | chr4... 664 0.0
> AT2G17730.2 | Symbols: NIP2 | NEP-interacting protein 2 | chr2:7703947-7705748
FORWARD LENGTH=1269
Length=1269
Score = 1125 bits (609), Expect = 0.0
Identities = 682/717 (95%), Gaps = 6/717 (1%)
Strand=Plus/Plus
Query 1 GTTTCTGGGTTCTTAAGAAAAACATGG---C--C-TCATCATCATCTTATAGATTCCAAT 54
||||||||||||||||||| ||||||| | | |||||||||||||||||||||||||
Sbjct 173 GTTTCTGGGTTCTTAAGAATAACATGGCCTCGTCATCATCATCATCTTATAGATTCCAAT 232
Query 55 CTGGGTTTTGTCCTCTTTCGTCAAGTCCTTCTCTTGGGAATTTCGTCGAACGGATTAAAG 114
|||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 233 CTGGGTCTTACCCTCTTTCGTCAAGTCCTTCTCTTGGGAATTTCGTCGAACGCATTAAAG 292
Query 115 ACGCTTGTCATTTCCTTGTCTCTGCTGTTTTTGGTACCATTATCTCGGCGATCTTGACCT 174
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 293 ACGCTTGTCATTTCCTTGTCTCTGCTGTTTTGGGTACCATTATCTCCGCGATCTTGACCT 352
Query 175 TCTTCTTCGCACTAGTGGGAACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAG 234
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TCTTCTTCGCACTAGTGGGCACATTGCTAGGGGCACTTACAGGAGCTTTGATAGGTCAAG 412
Query 235 AAACTGAGAGTGGTTTCATTAGAGGAGCAGCAATTGGAGCCATTTCTGGAGCTGTTTTCT 294
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 413 AAACTGAGAGTGGTTTCATTAGAGGAGCAGCAATTGGAGCCATTTCGGGAGCTGTTTTCT 472
Query 295 CTATTGAGGTCTTTGAATCATCACTTGATCTCTGGAAATCCGATGAGTCGGGTTTCGGTT 354
|||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 473 CTATCGAGGTCTTTGAATCATCTCTGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGAT 532
Query 355 GTTTTCTCTACTTGATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAAC 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 533 GTTTTCTCTACTTGATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGC 592
Query 415 GCATTGGTCCTGCAATGCTAAGTGCGGTGCAAAGTCAAATGGGAGCTGTGGATGCAGCCT 474
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 593 GCATTGGTCCTGCAATGCTAAGTGCAGTGCAAAGTCAAATGGGAGCTGTGGATACAGCTT 652
Query 475 TTGATGATCACACTAGCCTCTTTGATACAGGAGGCTCAAAAGGATTAACAGGAGAACTTG 534
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 653 TTGATGATCACACAAGCCTTTTTGATACAGGAGGCTCAAAAGGATTGACAGGAGACCTTG 712
Query 535 TTGAGAAAATCCCAAAGATGACAATCACTGGCAACAATAACACCGATGCTCCTGAAAACA 594
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct 713 TTGAGAAAATCCCAAAGATGACAATCACTGGCAACAATAACACTGATGCTTCTGAGAACA 772
Query 595 GAGACCCCTGTTCTGTTTGTCTTCAGGATTTCCAGCTTGGTGAAACAGTTAGAAGCTTGC 654
|||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 773 CAGACTCATGTTCTGTTTGTCTTCAGGATTTCCAGCTCGGTGAAACAGTTAGAAGCTTGC 832
Query 655 CTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTCAGACACG 711
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 833 CTCATTGTCATCACATGTTTCACTTACCTTGCATAGACAATTGGCTCCTTAGACACG 889
> AT4G35840.1 | Symbols: | RING/U-box superfamily protein | chr4:16980961-16982365
FORWARD LENGTH=932
Length=932
Score = 664 bits (359), Expect = 0.0
Identities = 599/716 (84%), Gaps = 12/716 (2%)
Strand=Plus/Plus
Query 39 TCTTATAGATTCCAATCTGGGTTTTGTCCTCTTTCGTCAAGTCCTTCTCTTGGGAATTTC 98
|||| ||||||||||||||||||||||||| | || || |||| ||||||| |||||||
Sbjct 129 TCTTCTAGATTCCAATCTGGGTTTTGTCCTATCTCTTCGTGTCCCTCTCTTGAGAATTTC 188
Query 99 GTCGAACGGATTAAAGACGCTTGTCATTTC-CTTGTCTCTGCTGTTTTTGGTACCATTAT 157
||||| ||||||||||||| |||| |||| | |||| |||||| | || || ||| |
Sbjct 189 ATCGAAAGGATTAAAGACGCATGTCGTTTCAC-CCTCTCCGCTGTTCTAGGGACAATTCT 247
Query 158 CTCGGCGATCTTGACCTTCTTCTTCGCACTAGTGGGAACATTGCTAGGGGCACTTACAGG 217
||||||| ||||||| ||||||||||| ||||||| |||||||| || |||||||| ||
Sbjct 248 CTCGGCGGTCTTGACTTTCTTCTTCGCTTTAGTGGGCACATTGCTTGGAGCACTTACTGG 307
Query 218 AGCTTTGATAGGTCAAGAAACTGAGAGT-GGTTTCATTAGAGGAGCAGCAATTGGAGCCA 276
|||||||||||| |||||||| || ||| ||||| || ||||||| || |||||||||
Sbjct 308 AGCTTTGATAGGCCAAGAAACCGAAAGTGGGTTT-ATCCGAGGAGCGGCGGTTGGAGCCA 366
Query 277 TTTCTGGAGCTGTTTTCTCTATTGAGGTCTTTGAATCATCACTTGATCTCTGGAAATCCG 336
|||| ||||||||||||||||| || |||||||| ||||| |||| ||| ||||||||
Sbjct 367 TTTCGGGAGCTGTTTTCTCTATCGAAGTCTTTGAGTCATCTCTTGTTCTTTGGAAATCTA 426
Query 337 ATGAGTCGGGTTTCGGTTGTTTTCTCTACTTGATTGATGTCATTGTTAGTCTTCTAAGCG 396
||||||| |||| || ||| | ||||||||||||||||||||||||||||| |||| |
Sbjct 427 ATGAGTCACGTTTTGGATGTCTCCTCTACTTGATTGATGTCATTGTTAGTCTGATAAGTG 486
Query 397 GGAGACTTGTACGAGAACGCATTGGTCCTGCAATGCTAAGTGCGGTGCAAAGTCAAATGG 456
| |||||||| || ||||| || ||||| ||||||||||||||||| |||||||| ||||
Sbjct 487 GTAGACTTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAGATGG 546
Query 457 GAGCTGTGGATGCAGCCTTT-GATGATCACACTAGCCTCTTT-GATACAGGAGGCTCAAA 514
||||||||||| || | ||| || || | | | || | ||| ||||| || ||||||||
Sbjct 547 GAGCTGTGGATTCAAC-TTTCGAAGAGCTCTCGAGTAT-TTTCGATACCGGTGGCTCAAA 604
Query 515 AGGATTAACAGGAGAACTTG-TTGAGAAAATCCC-AAAGATGACAATCACTGGCAACAAT 572
|| ||||||||||| ||| |||| ||||| || ||| || | |||||||||||| ||
Sbjct 605 GGGGTTAACAGGAGAT-TTGGTTGATAAAATACCTAAA-ATCAAAATCACTGGCAAAAAC 662
Query 573 AACACCGATGCTCCTGAAAACAGAGACCCCTGTTCTGTTTGTCTTCAGGATTTCCAGCTT 632
||| |||||| ||| |||| |||| | ||||||||||||||||||||||| || |||
Sbjct 663 AACTTAGATGCTTCTGGCAACAAAGACTCATGTTCTGTTTGTCTTCAGGATTTTCAACTT 722
Query 633 GGTGAAACAGTTAGAAGCTTGCCTCATTGTCATCACATGTTTCACTTACCTTGCATAGAC 692
|||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 723 GGTGAAACGGTGAGAAGCTTGCCACATTGTCATCACATGTTTCACTTGCCTTGCATAGAC 782
Query 693 AATTGGCTCCTCAGACACGGTTCTTGCCCGATGTGTAGACGTGACCTTTAATCTCT 748
||||||||| |||| ||||| ||||| || ||||||||||| || || ||||||||
Sbjct 783 AATTGGCTCTTCAGGCACGGATCTTGTCCAATGTGTAGACGCGATCTGTAATCTCT 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5