BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931663 Length=932 Score E Sequences producing significant alignments: (Bits) Value AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like super... 1495 0.0 AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5... 84.2 2e-15 AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like super... 78.7 9e-14 > AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superfamily protein | chr2:7808871-7810795 REVERSE LENGTH=1232 Length=1232 Score = 1495 bits (809), Expect = 0.0 Identities = 892/930 (96%), Gaps = 14/930 (2%) Strand=Plus/Plus Query 2 AAAAGTCGAATCAAACACACATGGAGCCACCACAGCATCAGCATCATCATCATCAAGCCG 61 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 105 AAAAGTCGAATCAAACACACATGGAGCCGCCACAGCATCAGCATCATCATCATCAAGCCG 164 Query 62 ACCAAGAAAGCGGcaacaacaacaacaacaaGTCCGGCTCTGGTGGTTACACGTGTCGCC 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 165 ACCAAGAAAGCGGCAACAACAACAACAACAAGTCCGGCTCTGGTGGTTACACGTGTCGCC 224 Query 122 AGACCAGCACGAGGTGGACACCGACGACGGAGCAAATCAGAATCCTCAAAGAACTTTACT 181 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 225 AGACCAGCACGAGGTGGACACCGACGACGGAGCAAATCAAAATCCTCAAAGAACTTTACT 284 Query 182 ACAACAGTGGAGTCCGGTCACCAACAGCCGATCAGATCCAGAAGATCACTGCAAGGCTGA 241 |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 285 ACAACAATGCAATCCGGTCACCAACAGCCGATCAGATCCAGAAGATCACTGCAAGGCTGA 344 Query 242 GACAGTACGGAAAGATCGAGGGCAAGAACGTCTTTTACTGGTTCCAGAACCATAAGGCTC 301 |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 345 GACAGTTCGGAAAGATTGAGGGCAAGAACGTCTTTTACTGGTTCCAGAACCATAAGGCTC 404 Query 302 GTGAGCGTCAGAAGAAGAGATTCAACGGCACAACCATGACCACACCATCTTCATCGCCCA 361 |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| Sbjct 405 GTGAGCGTCAGAAGAAGAGATTCAACGGAACAAACATGACCACACCATCTTCATCACCCA 464 Query 362 ACTCGGTTATGATGGCGGCTAATGATCATTATCATCAACATCATCCTCTACTTCACCATC 421 |||||||||||||||||||||| |||| || | ||||||||||||||||||||| Sbjct 465 ACTCGGTTATGATGGCGGCTAACGATC---AT--T----ATCATCCTCTACTTCACCATC 515 Query 422 ATCATGGTGTTCCCATGCAGAGACCTGCTAATTCCGTCAACGTTAAACTTAATCAAGACC 481 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 516 ATCACGGTGTTCCCATGCAGAGACCTGCTAATTCCGTCAACGTTAAACTTAACCAAGACC 575 Query 482 ATCATCTCTACCATCATAACAAGTCATATCCCAGCTTCAATAACGGGAATTTAAATCATG 541 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 576 ATCATCTCTATCATCATAACAAGCCATATCCCAGCTTCAATAACGGGAATTTAAATCATG 635 Query 542 CAAGCTCAGGTACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTACATGATGAGTAGCC 601 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 636 CAAGCTCAGGTACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTAC---ATGAGTAGCC 692 Query 602 ATGTCTATGGATCTATGGAACAAGATTGTTCTATGAATTACAACAACGTAGGTGGAGGAT 661 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 693 ATGTCTATGGATCTATGGAACAAGACTGTTCTATGAATTACAACAACGTAGGTGGAGGAT 752 Query 662 GGGCAAACATGGATCATCATTACTCATCTGCACCTTACAACTTCTTCGATAGA-CAAAAG 720 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 753 GGGCAAACATGGATCATCATTACTCATCTGCACCTTACAACTTCTTCGATAGAGCAAA-G 811 Query 721 CCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCATATCTG 780 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 812 CCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTG 871 Query 781 GAACATCGACGTACGCTTCCGCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGT 840 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 872 GAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGT 931 Query 841 AATGGTGCCATCTGGAAGTATGGCCAATCGGAAGTTCGTCCTTGTACTTCTCTTGAGCTA 900 | |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 932 AGTGGTGCCATCTGGAAGTATGGCCAATCGGAAGTTCGCCCTTGCGCTTCTCTTGAGCTA 991 Query 901 CGTCTGAACTAGCTCGTACGCCGGCGTCGC 930 ||||||||||||||| |||||||| ||||| Sbjct 992 CGTCTGAACTAGCTCTTACGCCGGTGTCGC 1021 > AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5:23933404-23934690 REVERSE LENGTH=850 Length=850 Score = 84.2 bits (45), Expect = 2e-15 Identities = 79/95 (83%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 208 GCCGATCAGATCCAGAAGATCACTGCAAGGC-T-GAGACAGTACGGAAAGATCGAGGGCA 265 ||||||||||| ||| ||||||| | |||| | | | | |||||| | ||||| || | Sbjct 175 GCCGATCAGATTCAGCAGATCACCGGTAGGCTTCGTG-C-GTACGGCCATATCGAAGGTA 232 Query 266 AGAACGTCTTTTACTGGTTCCAGAACCATAAGGCT 300 | ||||||||||||||||||||||||||||||||| Sbjct 233 AAAACGTCTTTTACTGGTTCCAGAACCATAAGGCT 267 > AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superfamily protein | chr2:12262013-12263415 FORWARD LENGTH=966 Length=966 Score = 78.7 bits (42), Expect = 9e-14 Identities = 47/49 (96%), Gaps = 1/49 (2%) Strand=Plus/Plus Query 253 AAG-ATCGAGGGCAAGAACGTCTTTTACTGGTTCCAGAACCATAAGGCT 300 ||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 240 AAGAATCGAGGGCAAAAACGTCTTTTACTGGTTCCAGAACCATAAGGCT 288 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45562371329 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5