BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931663
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like super... 1495 0.0
AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5... 84.2 2e-15
AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like super... 78.7 9e-14
> AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superfamily
protein | chr2:7808871-7810795 REVERSE LENGTH=1232
Length=1232
Score = 1495 bits (809), Expect = 0.0
Identities = 892/930 (96%), Gaps = 14/930 (2%)
Strand=Plus/Plus
Query 2 AAAAGTCGAATCAAACACACATGGAGCCACCACAGCATCAGCATCATCATCATCAAGCCG 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 105 AAAAGTCGAATCAAACACACATGGAGCCGCCACAGCATCAGCATCATCATCATCAAGCCG 164
Query 62 ACCAAGAAAGCGGcaacaacaacaacaacaaGTCCGGCTCTGGTGGTTACACGTGTCGCC 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 ACCAAGAAAGCGGCAACAACAACAACAACAAGTCCGGCTCTGGTGGTTACACGTGTCGCC 224
Query 122 AGACCAGCACGAGGTGGACACCGACGACGGAGCAAATCAGAATCCTCAAAGAACTTTACT 181
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 225 AGACCAGCACGAGGTGGACACCGACGACGGAGCAAATCAAAATCCTCAAAGAACTTTACT 284
Query 182 ACAACAGTGGAGTCCGGTCACCAACAGCCGATCAGATCCAGAAGATCACTGCAAGGCTGA 241
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ACAACAATGCAATCCGGTCACCAACAGCCGATCAGATCCAGAAGATCACTGCAAGGCTGA 344
Query 242 GACAGTACGGAAAGATCGAGGGCAAGAACGTCTTTTACTGGTTCCAGAACCATAAGGCTC 301
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GACAGTTCGGAAAGATTGAGGGCAAGAACGTCTTTTACTGGTTCCAGAACCATAAGGCTC 404
Query 302 GTGAGCGTCAGAAGAAGAGATTCAACGGCACAACCATGACCACACCATCTTCATCGCCCA 361
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||
Sbjct 405 GTGAGCGTCAGAAGAAGAGATTCAACGGAACAAACATGACCACACCATCTTCATCACCCA 464
Query 362 ACTCGGTTATGATGGCGGCTAATGATCATTATCATCAACATCATCCTCTACTTCACCATC 421
|||||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct 465 ACTCGGTTATGATGGCGGCTAACGATC---AT--T----ATCATCCTCTACTTCACCATC 515
Query 422 ATCATGGTGTTCCCATGCAGAGACCTGCTAATTCCGTCAACGTTAAACTTAATCAAGACC 481
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 516 ATCACGGTGTTCCCATGCAGAGACCTGCTAATTCCGTCAACGTTAAACTTAACCAAGACC 575
Query 482 ATCATCTCTACCATCATAACAAGTCATATCCCAGCTTCAATAACGGGAATTTAAATCATG 541
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 576 ATCATCTCTATCATCATAACAAGCCATATCCCAGCTTCAATAACGGGAATTTAAATCATG 635
Query 542 CAAGCTCAGGTACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTACATGATGAGTAGCC 601
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 636 CAAGCTCAGGTACTGAATGTGGTGTTGTTAATGCTTCTAATGGCTAC---ATGAGTAGCC 692
Query 602 ATGTCTATGGATCTATGGAACAAGATTGTTCTATGAATTACAACAACGTAGGTGGAGGAT 661
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 693 ATGTCTATGGATCTATGGAACAAGACTGTTCTATGAATTACAACAACGTAGGTGGAGGAT 752
Query 662 GGGCAAACATGGATCATCATTACTCATCTGCACCTTACAACTTCTTCGATAGA-CAAAAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 753 GGGCAAACATGGATCATCATTACTCATCTGCACCTTACAACTTCTTCGATAGAGCAAA-G 811
Query 721 CCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCATATCTG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 812 CCTCTGTTTGGTCTAGAAGGTCATCAAGAAGAAGAAGAATGTGGTGGCGATGCTTATCTG 871
Query 781 GAACATCGACGTACGCTTCCGCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGT 840
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 872 GAACATCGACGTACGCTTCCTCTCTTCCCTATGCACGGTGAAGATCACATCAACGGTGGT 931
Query 841 AATGGTGCCATCTGGAAGTATGGCCAATCGGAAGTTCGTCCTTGTACTTCTCTTGAGCTA 900
| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 932 AGTGGTGCCATCTGGAAGTATGGCCAATCGGAAGTTCGCCCTTGCGCTTCTCTTGAGCTA 991
Query 901 CGTCTGAACTAGCTCGTACGCCGGCGTCGC 930
||||||||||||||| |||||||| |||||
Sbjct 992 CGTCTGAACTAGCTCTTACGCCGGTGTCGC 1021
> AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5:23933404-23934690
REVERSE LENGTH=850
Length=850
Score = 84.2 bits (45), Expect = 2e-15
Identities = 79/95 (83%), Gaps = 4/95 (4%)
Strand=Plus/Plus
Query 208 GCCGATCAGATCCAGAAGATCACTGCAAGGC-T-GAGACAGTACGGAAAGATCGAGGGCA 265
||||||||||| ||| ||||||| | |||| | | | | |||||| | ||||| || |
Sbjct 175 GCCGATCAGATTCAGCAGATCACCGGTAGGCTTCGTG-C-GTACGGCCATATCGAAGGTA 232
Query 266 AGAACGTCTTTTACTGGTTCCAGAACCATAAGGCT 300
| |||||||||||||||||||||||||||||||||
Sbjct 233 AAAACGTCTTTTACTGGTTCCAGAACCATAAGGCT 267
> AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superfamily
protein | chr2:12262013-12263415 FORWARD LENGTH=966
Length=966
Score = 78.7 bits (42), Expect = 9e-14
Identities = 47/49 (96%), Gaps = 1/49 (2%)
Strand=Plus/Plus
Query 253 AAG-ATCGAGGGCAAGAACGTCTTTTACTGGTTCCAGAACCATAAGGCT 300
||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 AAGAATCGAGGGCAAAAACGTCTTTTACTGGTTCCAGAACCATAAGGCT 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45562371329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5