BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931665
Length=521
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17972.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 778 0.0
AT2G17975.1 | Symbols: | zinc finger (Ran-binding) family prot... 78.7 5e-14
> AT2G17972.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth
stages; Has 34 Blast hits to 34 proteins in 17 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr2:7821585-7822330 FORWARD LENGTH=746
Length=746
Score = 778 bits (421), Expect = 0.0
Identities = 492/525 (94%), Gaps = 9/525 (2%)
Strand=Plus/Plus
Query 1 AATCTTAAAAACAAC-AC-AAAATGAAAACTCTTCACTTTTTAGCTCCCAATTCAACCAT 58
||||||||||||||| || |||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 18 AATCTTAAAAACAACAACAAAAATGAAAAGTCTCCACTTTTTAGCTCCCAATTCAACGAT 77
Query 59 TATCAATCTGAAGCACCAACAATCTTACACACAAACCAAGTTCCAGTTGCATCGTAACAA 118
||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |||
Sbjct 78 TATCAATCTGAAG---CAACAATCTTATACAAAAACCAAGTTCCAGTTGCATCGTAGCAA 134
Query 119 CAGAAGAACACTATCGATAAACTGTGTAAACAGTGGAGGAGATGATGAGAAGATCT-CTC 177
||||||||| |||||||||||||| ||||||||||| || ||||| |||||||| | |||
Sbjct 135 CAGAAGAACTCTATCGATAAACTGCGTAAACAGTGGCGGTGATGAAGAGAAGAT-TACTC 193
Query 178 AGCCGTTGGATGGAGTGGAGATAAGATTCAAAAGAGGATCCagaaggaaaatgagggaag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 AGCCGTTGGATGGAGTGGAGATAAGATTCAAAAGAGGATCCAGAAGGAAAATGAGGGAAG 253
Query 238 agggttcaggagaaggaggaggacaaaacgggaa-aaagaaagagaCTGTACAAAAGCCA 296
||||||||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||
Sbjct 254 AGGGTTCAGGAGAAGGAGGAGGACAAAGCGGGAAGAAA-AAAGAGACTGTTCAAAAGCCA 312
Query 297 TGGGAAGAGATGACGTTGAATGAGAAGGCATTGGAGCTTTATGTTGGAGAGAAAGGTTTG 356
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TGGGAAGAGATGACATTGAATGAGAAGGCATTGGAGCTTTATGTTGGAGAGAAAGGTTTG 372
Query 357 TTGTTTTGGCTGAACAAATTGGCTTACGCGTCGATTTACATTGTCATTGGAGGTTGGATT 416
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 373 TTGTTTTGGCTAAACAAATTGGCTTACGCGTCGATATACATTGTCATTGGAGGTTGGATT 432
Query 417 CTTTTCCGGTTTGTTGGACCGGCGTTCAATCTTTATCAGCTTGATACGCCACCTCTTGAT 476
||||||||||||||||||||||||| ||||||||||| || ||||| || |||||||||
Sbjct 433 TTTTTCCGGTTTGTTGGACCGGCGTTTAATCTTTATCAACTCGATACACCGCCTCTTGAT 492
Query 477 CCTAAGAACATCTTAAAGGGTTAAGAAAAGCTTTTTAGCTGTGTC 521
|||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 493 CCTAAGAACATCTTAAAGGGTTAAGAAATGCTTTGTAGCTGTGTC 537
> AT2G17975.1 | Symbols: | zinc finger (Ran-binding) family protein
| chr2:7822074-7824005 REVERSE LENGTH=1006
Length=1006
Score = 78.7 bits (42), Expect = 5e-14
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 474 GATCCTAAGAACATCTTAAAGGGTTAAGAAAAGCTTTTTAGCTGTGTC 521
||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1006 GATCCTAAGAACATCTTAAAGGGTTAAGAAATGCTTTGTAGCTGTGTC 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24916136912
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5