BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931672

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18010.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   527    3e-149


> AT2G18010.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr2:7833902-7834240 FORWARD LENGTH=339
Length=339

 Score =  527 bits (285),  Expect = 3e-149
 Identities = 322/340 (95%), Gaps = 2/340 (1%)
 Strand=Plus/Plus

Query  21   ATGGCAATAAAGAGATCGAGCAAAGCAACGTCGTCTCAAGCAGCATCTATTAAGCAAATG  80
            |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct  1    ATGGCAATAAAGAGATCGAGCAAAGCGACGTCGTCTCAAGCAGCATCTATCAAGCAAATA  60

Query  81   GTAAAAAGATGCTCGAGTCTAAGAAAGATGAAGAACGTGAATGGTTGCTATTATAACCAA  140
            ||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct  61   GTAAAGAGATGCTCGAGTCTAAGAAAGATGAAGAACGTAAATGGTTGTTACTATAACCAA  120

Query  141  GAAGATGATCTTCCTCAAGACGTGCCAAAAGGTCATTTTCCCGTTTACGTGGGACCGAAC  200
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  121  GAAGATGATCTTCCTCAAGACGTGCCAAAAGGTCATTTTCCGGTTTACGTGGGACCGAAC  180

Query  201  CGAAGTCGGTACATCGTTCCCATCTCGTGGCTCGACCACTCTGAGTTTCAAACGTTGCTC  260
            |||||||||||||||||||| ||||| |||||| | ||||| ||||| ||||| ||||||
Sbjct  181  CGAAGTCGGTACATCGTTCCTATCTCATGGCTCCATCACTCCGAGTTCCAAACATTGCTC  240

Query  261  CGACTAGCTGAGGAAGAGTTTGGGTTTGACCATGATATGGGTCTAACCATTCCTTGTGAT  320
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CGACTAGCTGAGGAAGAATTTGGGTTTGACCATGATATGGGTCTAACCATTCCTTGTGAT  300

Query  321  GAAGTCTTCTTCAGGTCTCTTATCTCCGA-GTTTAGATAA  359
            ||||||||||||||||||||||||||| | ||||||||||
Sbjct  301  GAAGTCTTCTTCAGGTCTCTTATCTCC-ATGTTTAGATAA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17845050895


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5