BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931690
Length=2528
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18090.1 | Symbols: | PHD finger family protein / SWIB comp... 3847 0.0
> AT2G18090.1 | Symbols: | PHD finger family protein / SWIB complex
BAF60b domain-containing protein / GYF domain-containing
protein | chr2:7864314-7867766 FORWARD LENGTH=3111
Length=3111
Score = 3847 bits (2083), Expect = 0.0
Identities = 2378/2518 (94%), Gaps = 30/2518 (1%)
Strand=Plus/Plus
Query 22 CGATGCCGGAAATCGATCTTATGAGAGTCGATCAATGTGTTTCCGATGTTAAATTGGATT 81
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 186 CGATGCCGGAAATCGATCTTATGAGAGTCGATCATTGTGTTTCCGATGTTAAATTAGATG 245
Query 82 CTTCTTCTTCTCCTATTGAACCTCCTGGATTCTTCGATGGTGGT-G-GTTCTG-TAGATG 138
|||||||||| | | ||||| |||||||||||||||||| | |||| | |||||
Sbjct 246 ATTCTTCTTCT--T-CT---CCTCCGGGATTCTTCGATGGTGGTGGTGTTCCGTTAGAT- 298
Query 139 TC-GATTTGAAGTTAGATGAACAAGATTCCGATTGTTTGAAGAAGAGAGGTAGACGTGGC 197
|| ||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 299 TCGGATGTGAAGTTAGACGAAGAAGATTCCGATTCTTTGAAGAAGAGAGGTAGACGTGGT 358
Query 198 CGTCCACCGAGAACTTTGT-G-TAAAGCTTCTTCTCCTCCGATTTCGAGGAAGAGAAGAG 255
||||| ||||||| ||| | | |||||||||||| |||||||||||||||||||||||||
Sbjct 359 CGTCCGCCGAGAA-TTT-TAGCTAAAGCTTCTTCGCCTCCGATTTCGAGGAAGAGAAGAG 416
Query 256 AAGATGAAGATGTTTGTTTTGTGTGCTTTGATGGTGGTAGTCTTGTACTTTGCGATCGTA 315
|||||||||||||||| ||||| ||||| ||||||||||||||||| || ||||||||||
Sbjct 417 AAGATGAAGATGTTTGCTTTGTTTGCTTCGATGGTGGTAGTCTTGTTCTCTGCGATCGTA 476
Query 316 GGGGATGTCCAAAAGCGTATCACCCAGCTTGTGTTAAGCGTACTGAAGCATTCTTCAGAT 375
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGGGATGTCCAAAGGCTTATCACCCAGCTTGTGTTAAGCGTACTGAAGCATTCTTCAGAT 536
Query 376 CAAGATCTAAATGGAATTGTGGTTGGCATATATGTACTACTTGTCAAAAGGATTCCTTCT 435
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 537 CGAGATCTAAATGGAATTGTGGTTGGCACATATGTACTACTTGTCAAAAGGATTCGTTCT 596
Query 436 ACATGTGTTATACTTGTCCGTATTCAGTTTGTAAGAGATGTGTTAGAAGCTCGGAGTATG 495
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 597 ACATGTGTTATACTTGTCCGTATTCAGTTTGTAAGAGGTGTGTTAGAAGCTCAGAGTATG 656
Query 496 TAGTTGTAAGGGAAAACAAAGGATTCTGTGGAATTTGCATGAAGACTATAATGCTTATTG 555
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 657 TAGTTGTAAGGGAGAACAAAGGATTCTGTGGAATTTGTATGAAGACTATAATGCTTATTG 716
Query 556 AGAATGCAGCTGAAGCTAACAAAGAAAAGGTTCAGGTCGATTTTGATGATCAAGGCAGCT 615
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 717 AGAATGCAGCTGAAGCTAACAAAGAAAAGGTTCAGGTTGATTTTGATGATCAAGGCAGCT 776
Query 616 GGGAGTATCTGTTTAAGATTTACTGGGTTTCTCTTAAAGAAAAGCTAGGTTTATCGTTAG 675
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GGGAGTATCTTTTTAAGATTTACTGGGTTTCTCTTAAAGAAAAGCTAGGTTTATCGTTAG 836
Query 676 ATGATCTTACGAAAGCAAGAAATCCATGGAAATCTTCTTCGTCGACTGTTTCTAAGCGAA 735
|||||||||| ||||||| ||||||||||||||||||||| || |||| |||||||||
Sbjct 837 ATGATCTTACCAAAGCAAAAAATCCATGGAAATCTTCTTCTTCTACTGCCGCTAAGCGAA 896
Query 736 GAACTACTAGTCGGGTTCATGAAAAGGATGATGGAAATTCTCCTGGGGTTATGAAAGTAC 795
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 897 GAACTACTAGTCGGGTTCATGAAAAGGATGATGGAAATTCTCCTGGGGTTATGAAAATAC 956
Query 796 GTCGTGCTAAAGTAAGGAAAATGGAAGCTGTTTCTGTTAGTAATTTGGGTCCTTCTATGG 855
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 957 GTCGTGCTAAAGTAAGGAAAATGGATGCTGTTTCTGTGAGTAATTTGGGTCCTTCTTTGG 1016
Query 856 ATTCAAACAGTTCTTTGGGTGACAGACTTCCACCATTGACTAGTGCTGCTACTTGGGCAA 915
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1017 ATTCAAACTGTTCTTTGGGTGACAGACTTCCACAATTGACTAGTGCTGCTACTTGGGCAA 1076
Query 916 -CAGATGAGCTCTTGGACTTTGTTGGGTATATGAAAAACGGTGATATTTCTGTCTTATCA 974
|| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1077 CCA-ATGAGCTTTTGGACTTTGTGGGGTATATGAAAAACGGTGATATTTCTGTCTTATCA 1135
Query 975 AAGTATGATGTCCAAACTCTCGTTCTAGAGTATGTGAGACGGAATAATCTACAAAACTCT 1034
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1136 AAGTATGATGTCCAAACTCTCGTGCTAGAGTATGTGAGACGGAATAATCTACAAAACTCT 1195
Query 1035 CCTCAGAATTCTGAAATAATGTGTGAC-CCTAAGCTTATGAGATTGTTTGGAAAGGAGCG 1093
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1196 CCTCAGAATTCTGAAATAATGTGTGACTCC-AAGCTTATGAGATTGTTTGGAAAGGAGCG 1254
Query 1094 AGTGGACAACTTGGAAATGTTAAAGCTTCTTGATTCTCACTTCATCGATCAAGTGAGGTC 1153
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1255 AGTGGACAACTTGGAAATGTTAAAGCTTCTTGATTCTCACTTCATCGATCAAGTTAGGTC 1314
Query 1154 TCCAGTCACAGATAACTCAGCCGGAGGAGTCACTGAAACTATGTCTTTCCAGGTCAATGC 1213
||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1315 TCCAGTCACAGATAATTCAGCCGGAGGAGTCACTGAAACTATGTCTTACCAGGTTAATGC 1374
Query 1214 GAGCAAAAGCTGTAATAGGCTT-AATACATCTGAACAGCATCAAGAAGGAGAGTCGCAGC 1272
| ||| ||||||| ||||| || |||||||||||||||||||||||||| || || ||||
Sbjct 1375 GGGCAGAAGCTGTGATAGG-TTAAATACATCTGAACAGCATCAAGAAGGGGAATCACAGC 1433
Query 1273 AATTGAACGGGCACAGTATTCAAGTTAGACCTTCCAGTTCTGATAGCAGAAACCATGCCG 1332
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1434 AATTGAACGGGCACAGTATTCAAGTTAGACCTTCCAGTTCTGATAGCAGAAACCATGCAG 1493
Query 1333 TGGTAAAACCTGACACATGTGCCACTCTGTCCAATAAGCCAATCGATGGCTTGGATACGA 1392
| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 1494 TTGTAAAACCTGACACAAGTGCCACTCTGTCCAATAAGCCAATTGATGGTTTGGATACAA 1553
Query 1393 ATATGGTGTGGTTATATGGGGATCCAGATGGGAAGATTCATGGACCATTTTCCTTATATA 1452
||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1554 ATATGGTATGGTTATATGGAGATCCAGATGGGAAGATTCATGGACCATTTTCGTTATATA 1613
Query 1453 ACCTGCGACAATGGAATTTGAGCGGGCATTTCCCTCCGGAGCTGAGAATATGGAGGTTGG 1512
|||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 1614 ACCTGCGACAATGGAATTCAAGCGGGCATTTCCCACCAGAGCTGAGAATATGGAGGTTGG 1673
Query 1513 GTGAACAGCAAAACAGCTCCATACTTTTGACCGACGCATTAAATGGGCAGTTCCATAAAA 1572
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1674 GTGAACAGCAACACAGCTCCATACTTTTGACTGACGCATTAAATGGGCAGTTCCATAAAA 1733
Query 1573 CAGGGTTATTACAGAATCATTCGATCCCCAAGCAGGATGTGACAGCTACTATAGCTAACG 1632
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1734 CAGGGTTATTACAGAATCATTCTATCCCCAAGCAGGAAGTGACAGCTACTATAGCTAACG 1793
Query 1633 ATCAAAACAGGCCTGTGGCTGTTCCTAAAATAGAGAGTAGAATACTTGACTTCAGCCCCA 1692
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 ATCAAAACAGGTCTGTGGCTGTTCCTAAAATAGAGAGTAGAATACTTGACTTCAGCCCCA 1853
Query 1693 ACTCAGTGTGCACTGACCAGAGTGTCATTTCTAGCAGTAACAGTGTCATCACAAGGAGCT 1752
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1854 ACTCAGTGTGCACTGACCAGAGTGTTATTTCTAGCAGTAACAGTGTCATCACAAGGAGCT 1913
Query 1753 CGGATGTGAGTAACAAAAGCGGAAACAATTTTAACCGCACCATGCCATTAGATTTTTCTC 1812
|||||||||||||||||||||||||||||| || || | || ||||||| ||||||||||
Sbjct 1914 CGGATGTGAGTAACAAAAGCGGAAACAATTGTAGCCACGCCGTGCCATTGGATTTTTCTC 1973
Query 1813 TTTCTAATGAAAGGGATACTGTGGGTTCTGTCTCTCTCTGGAACAAAAGAAAAGTTGAAA 1872
||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 1974 TTTCTAATGAAAGGGATACTGTGGGTTTTATCTCTCTCTGGGACAAAAGAAAAGTTGAAA 2033
Query 1873 GTCCTTTGCTTGTACAAAGCCCAATAAGCTGTTCACTTTCGCTTGCTACATTACCCAGAA 1932
|| |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 2034 GTTCTTTGCTTGTACAAAGCCCAATAAGCTGTTCACTCTCGCTGGCTACATTACCTAGAA 2093
Query 1933 ACTCAAACTGCTCTCTGCCACCACATGAAAGATGGAAG-GCTGGTCAAACAGATCCGGAT 1991
||||||||||||||||||||||||||||||||||| || |||||| |||| | |||
Sbjct 2094 ACTCAAACTGCTCTCTGCCACCACATGAAAGATGG-AGTGCTGGT----CAGA--CAGAT 2146
Query 1992 GGAAACAATGCAGCAATGAATGCTTACAATCAAAACGGTAGTCTTAACGGCACAGCTGAG 2051
||||||| |||||||| || ||||| |||||||||||||||||||| |||| ||||||||
Sbjct 2147 GGAAACAGTGCAGCAACGACTGCTTGCAATCAAAACGGTAGTCTTAGCGGCTCAGCTGAG 2206
Query 2052 AAACAAGTCACGGCTACAGTCCAGTCTTGCGGACAGAACTGGAATGCTGCAACTCCAAGC 2111
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2207 AAACAAGTCACGGCTACAGTCCAGTCATGTGGACAGAACTGGAATGCTGCAACTCCAAGC 2266
Query 2112 AGTGCTTCGAATATGTGGGATTCTAACTCGGGTTTGACGTCTTTCCCAGACAATCAAGAA 2171
|||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2267 AGTGCTTCAAATGTGTGGGATTCGAACTCGGGTTTGACGTCTTTCCCAGACAATCAAGAA 2326
Query 2172 ATAGACTTTTTAGATCTCTTTAGTCCAACTTTCAAATTCAACTTTGCATCTACTACCACG 2231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 ATAGACTTTTTAGATCTCTTTAGTCCAACTTTCAAATTCAACTTTGCATCTACTACCACT 2386
Query 2232 GATTGGCAACCCATTGTGGCTGGACCTGACGAATGTGACGAATCAGTCTCGGATCTTTTG 2291
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2387 GATTGGCAACCCATTGTGGCTGGACCTGACGAATGCGACGAATCAGTCTCAGATCTTTTG 2446
Query 2292 GCAGAAGTGGAAGCCATGGAGTCCCAAAAACGTCTTCCTTCTCCAACTTCAACATTCCGT 2351
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2447 GCAGAAGTGGAAGCCATGGAGTCCCAAAAACGTCTTCCTTCTCCAACTTCGACATTCCGT 2506
Query 2352 GGTCCTGAAGAATTATTGATCCGGCACTCTATAAACGATAGCTTCAGTCCCGCTGAAGGA 2411
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2507 GGTCCTGAAGAATTATTAATCCGGCACTCAATAAACGATAGCTTCAGTCCCGCAGAAGGA 2566
Query 2412 CATAGCCCAGCACTAGATGTAAGCAAAGGTGACTCCATGAGCTCCACAAACGATCTGCAA 2471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2567 CATAGCCCAGCACTAGATGTAAGCAAAGGTGACTCCATGAGCTCCACAAACGATCTTCAA 2626
Query 2472 ATGCATTCACGATCTAACAACACCGTGCATTTTTAGTCGTGGGCTCGG-TTCACTTAG 2528
||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct 2627 ATGCATTCACGATCTAACAGCACCGTGCATTTTTAGTCGTGGGCTCGGGTTCACATAG 2684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125467524443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5