BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931705
Length=401
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18190.1 | Symbols: | P-loop containing nucleoside triphosp... 440 4e-123
AT2G18193.1 | Symbols: | P-loop containing nucleoside triphosp... 387 6e-107
> AT2G18190.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:7914305-7915872
REVERSE LENGTH=1485
Length=1485
Score = 440 bits (238), Expect = 4e-123
Identities = 298/327 (91%), Gaps = 4/327 (1%)
Strand=Plus/Plus
Query 1 CTGCTCTGCTACGTCCTGGAAGAATGGATGTGCATATCAACATGTCTTATTGTACAGGTT 60
|||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1091 CTGCTCTGTTACGTCCTGGAAGAATGGATATGCATATCAACATGTCTTACTGTACAGGTT 1150
Query 61 TAGGGTTTAGGACATTGGTCTCTAACTATCTCGGTTTAGATGGCTTAAACCATCCTCTAT 120
||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| |
Sbjct 1151 TAGGGTTTAGGACATTGGTCTCTAATTACCTCGGTTTAGGTGGCTTAAACCATCCTCTTT 1210
Query 121 GTGAAGAAATTGAGGCGCTGATTGATTCCACAGAGGTGACTCCGGCTGAGTTAGCTGAAG 180
| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1211 GCGAGGAAATCGAGGCGCTGATCGATTCCACTGAGGTGACTCCGGCTGAGTTAGCTGAAG 1270
Query 181 AGCTAATGCAAGACGATGACACGGATGTTGTTCTTCGTGGAGTAGTTAGCTTTGTTGAGA 240
|| | |||||||| ||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 1271 AGTTGATGCAAGAAGATGATACTGATGTTGTCCTTCGTGGAGTAGTTAGCTTTGTTGAGA 1330
Query 241 ACAGAAAGTTCGAGACAAGCAAAACCAAGGAGCTGGA-GGATTCTAATTGTA-AACTACT 298
| |||||| |||||| ||||||||||||||||||||| || ||||| ||||| || |||
Sbjct 1331 ATAGAAAGGTCGAGATAAGCAAAACCAAGGAGCTGGAAGG-TTCTACTTGTAGAAA-ACT 1388
Query 299 TGATGGTGACGAAAAACACAATGGTTC 325
|||||||||||| |||||||||| |||
Sbjct 1389 TGATGGTGACGATAAACACAATGTTTC 1415
> AT2G18193.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:7917505-7919277
REVERSE LENGTH=1697
Length=1697
Score = 387 bits (209), Expect = 6e-107
Identities = 289/327 (88%), Gaps = 7/327 (2%)
Strand=Plus/Plus
Query 1 CTGCTCTGCTACGTCCTGGAAGAATGGATGTGCATATCAACATGTCTTATTGTACAGGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 CTGCTCTGCTACGTCCTGGAAGAATGGATGTGCATATCAACATGTCTTATTGTACAGGTT 1231
Query 61 TAGGGTTTAGGACATTGGTCTCTAACTATCTCGGTTTAGATGGCTTAAACCATCCTCTAT 120
|||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 1232 TAGGATTTAGGACATTGGTCTCTAACTACCTTGGTTTAGATGGCTTAAACCATCCTCTTT 1291
Query 121 GTGAAGAAATTGAGGCGCTGATTGATTCCACAGAGGTGACTCCGGCTGAGTTAGCTGAAG 180
| || ||||| ||||||||| | ||||| || || || ||||| ||||||||||||||||
Sbjct 1292 GCGAGGAAATCGAGGCGCTGGTCGATTCTACTGAAGTTACTCCAGCTGAGTTAGCTGAAG 1351
Query 181 AGCTAATGCAAGACGATGACACGGATGTTGTTCTTCGTGGAGTAGTTAGCTTTGTTGAGA 240
|||| |||||||||||||| || || |||||||||||||||||| | |||||||||||||
Sbjct 1352 AGCTGATGCAAGACGATGATACTGACGTTGTTCTTCGTGGAGTAATAAGCTTTGTTGAGA 1411
Query 241 ACAGAAAG-TTCGAGACAAGCAAAACCAAGGAGCTGGAGGATTCTAATTGTAAA-CTACT 298
| || ||| || |||| |||||| || ||| || | ||| ||||| ||||||| | |||
Sbjct 1412 AGAGGAAGGTT-GAGAGAAGCAAGACTAAGAAG--G-AGGTTTCTATTTGTAAAGCAACT 1467
Query 299 TGATGGTGACGAAAAACACAATGGTTC 325
|||| |||||||||||| ||||||||
Sbjct 1468 -GATGATGACGAAAAACAGAATGGTTC 1493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18950941373
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5