BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931706
Length=337
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18190.1 | Symbols: | P-loop containing nucleoside triphosp... 396 8e-110
AT2G18193.1 | Symbols: | P-loop containing nucleoside triphosp... 278 3e-74
> AT2G18190.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:7914305-7915872
REVERSE LENGTH=1485
Length=1485
Score = 396 bits (214), Expect = 8e-110
Identities = 268/293 (91%), Gaps = 7/293 (2%)
Strand=Plus/Plus
Query 24 ATGTTTCCTTC---ATCCAATTTCTCTTTCTCACCATCGTCGCTGTTCT-CAGCGTACGC 79
||||||||||| ||||||| ||||||| ||||||||||||||||| | ||||||||||
Sbjct 1 ATGTTTCCTTCAATATCCAATATCTCTTTATCACCATCGTCGCTGTT-TACAGCGTACGC 59
Query 80 ATCCTTAACCGGATTCTTGATGCTCTTTAGATCGTTGTTCAATGAT-ATCGTACCAGAGA 138
|||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||
Sbjct 60 GTCCTTAACCGGATTCTTGATGCTCTTTAGATCACTGTTCAATGATGA-AGTACCGGAGA 118
Query 139 GGCTCCGATCATACATCACCGACTTACTCAACCGGTTCTTGACTCCGAAATCAAAGAATT 198
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 119 GGCTCCGATCATACATCACCGACTTACTCAACCGGTTTTTCACTCCGAAATCAAAGAATT 178
Query 199 TGACTATGGTTATCGACGAGATGATCGGATATAAGAGGAACCAAGTTTTTGACGCGGCGG 258
|||||||||||||||||||||| ||||||| ||||||||||||||| || |||||||| |
Sbjct 179 TGACTATGGTTATCGACGAGATCATCGGATTTAAGAGGAACCAAGTGTTCGACGCGGCAG 238
Query 259 AGATGTACCTCCGGAACAAAATCGGACCAGAGACAGCACGTTTTCGAGTAGGT 311
|| ||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 239 AGGTGTACCTCCGGAACAAAATCGGACCCGAGACAGCCCGTTTACGAGTAGGT 291
> AT2G18193.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:7917505-7919277
REVERSE LENGTH=1697
Length=1697
Score = 278 bits (150), Expect = 3e-74
Identities = 246/292 (84%), Gaps = 8/292 (3%)
Strand=Plus/Plus
Query 24 ATGTTTCCTTCATCCA-ATTTCTCTTTCTCACCATCGTCGCTGTTCTCAGCGTACGCATC 82
||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 94 ATGTTTCCTTCAT-CAGATTTCTCTTTCTCACCGTCGTCGCTGTTCTCAGCGTACGCATC 152
Query 83 CTTAACCGGATTCTTGATGCTCTTTAGATCGTTGTTCAATGATATCGTACCAGAGAGGCT 142
|||||||||||||||||||||||||||||| || || ||||| ||||||| |||| |||
Sbjct 153 TTTAACCGGATTCTTGATGCTCTTTAGATCGATGCTCCATGATTTCGTACCGGAGAAGCT 212
Query 143 CCGATCATACATCACC-GACTTACTCAACCGGTTCTTGACTCCGAAATCAAAGAATTTGA 201
||||| ||| || || | ||||||| ||||||| || ||||||||||||||| || | |
Sbjct 213 TCGATCTTACTTCTCCAG-CTTACTCGACCGGTTTTTCACTCCGAAATCAAAGTATCTCA 271
Query 202 CTATGGTTATCGACGAGATGATCGGATAT-AAGAGGAACCAAGTTTTTGACGCGGCGGAG 260
|| || | |||||||||| |||||| | || |||| ||||| || ||||||||||||
Sbjct 272 CTGTGATCATCGACGAGAACTTCGGAT-TGAACCGGAATCAAGTCTTCGACGCGGCGGAG 330
Query 261 ATGTACCTCCGGAACAAAATCGGACCAGAGACAGCA-CGTTTTCGAGTAGGT 311
||||| ||| ||| ||| |||||||| || |||| | || || ||||| |||
Sbjct 331 ATGTATCTCAGGAGCAAGATCGGACCGGAAACAG-AGCGGTTGCGAGTTGGT 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15733805437
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5