BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931709
Length=395
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18210.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 399 7e-111
AT2G18200.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 351 2e-96
> AT2G18210.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G36500.1);
Has 50 Blast hits to 50 proteins in 7 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:7924958-7925875
REVERSE LENGTH=918
Length=918
Score = 399 bits (216), Expect = 7e-111
Identities = 271/298 (91%), Gaps = 1/298 (0%)
Strand=Plus/Plus
Query 8 CAA-TAACCCAGAAATGCAAATGCTAAGAACCCTAAGCACGAGAACAAGGAGCCGTCGCA 66
||| ||| |||||||||||||||||||||| | |||||||||| || ||||| ||||||
Sbjct 96 CAACTAATCCAGAAATGCAAATGCTAAGAAACTTAAGCACGAGGACGAGGAGTCGTCGCG 155
Query 67 GTGGATACGAACGTGTACGCAATGATTCCACCTTTAGCCTACTCGGAGCAAAGCTAAGGA 126
| ||||| || |||||| || ||||||||||||| |||||||| ||||||||||||||||
Sbjct 156 GCGGATATGAGCGTGTAAGCGATGATTCCACCTTCAGCCTACTTGGAGCAAAGCTAAGGA 215
Query 127 GGTCACCGAGCGTTCCATACTATGCTCCATCGATAAGGCTTGGTGGAGACTTTCCTGCGA 186
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 216 GGTCAACGAGCGTTCCATACTATGCTCCATCGATAAGGCTTGGTGGAGATTTTCCTGTGA 275
Query 187 TTTTGGAAAAGCTTCCACGCCAAAAACCAAATAAGACAGTGGTGACAAGCAGCTTGAGCC 246
|||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||
Sbjct 276 TTTTGGAAAAGCTTCCACGCCAAAAACCAACTAAAACAGTGGTGACAAGCAAATTAAGCC 335
Query 247 ATCCAATCTTTAGTTTATTTGAAGGTTATCGCCGCCATAGCAAGAAGAAAGCAACGGC 304
|||||||||| ||||||||||| |||||||||||||||| |||||||||||| |||||
Sbjct 336 ATCCAATCTTCAGTTTATTTGATGGTTATCGCCGCCATAACAAGAAGAAAGCGACGGC 393
> AT2G18200.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G18210.1); Has 19 Blast
hits to 19 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:7924267-7924659
REVERSE LENGTH=393
Length=393
Score = 351 bits (190), Expect = 2e-96
Identities = 239/261 (92%), Gaps = 10/261 (4%)
Strand=Plus/Plus
Query 1 AAAAGAACAATAACCCAGA-AATGCAAATGCTAAGAACCCTAAGCACGAGAACAAGGAGC 59
||||||||||||||||| | ||||||| ||||||||||||||| ||| ||||||||||||
Sbjct 68 AAAAGAACAATAACCCA-ATAATGCAATTGCTAAGAACCCTAACCACAAGAACAAGGAGC 126
Query 60 CGTCGCAGTGGATACGAACGTGT-ACGCAATG-ATTCCACCTTTAGCCTACTCGGAGCAA 117
||||||||||||||||| |||| || ||| | |||||| ||||||| ||||||||||||
Sbjct 127 CGTCGCAGTGGATACGAGTGTGTAAC-CAA-GCATTCCAACTTTAGCTTACTCGGAGCAA 184
Query 118 AGCTAAGGAGGTCACCGAGCGTTCCATACTATGCTCC--ATCGATAAGGCTTGGTGGAGA 175
|||||||||| ||| ||| |||||| ||||||||||| |||||| ||||||||||||||
Sbjct 185 AGCTAAGGAGCTCA-CGACCGTTCCTTACTATGCTCCATATCGAT-AGGCTTGGTGGAGA 242
Query 176 CTTTCCTGCGATTTTGGAAAAGCTTCCACGCCAAAAACCAAATAAGACAGTGGTGACAAG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CTTTCCTGCGATTTTGGAAAAGCTTCCACGCCAAAAACCAAATAAGACAGTGGTGACAAG 302
Query 236 CAGCTTGAGCCATCCAATCTT 256
|| |||||||||||||||||
Sbjct 303 CAAATTGAGCCATCCAATCTT 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18649334879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5