BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931710

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18210.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   592    1e-168
  AT2G18200.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   292    1e-78 


> AT2G18210.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G36500.1); 
Has 50 Blast hits to 50 proteins in 7 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:7924958-7925875 
REVERSE LENGTH=918
Length=918

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 374/401 (93%), Gaps = 0/401 (0%)
 Strand=Plus/Plus

Query  4    CTTCAACCAATCCAGAAATGCAAATGCTAAGAACCCTAAGCACGAGGACAAGGAGCCGTC  63
            ||||||| ||||||||||||||||||||||||| | ||||||||||||| ||||| ||||
Sbjct  93   CTTCAACTAATCCAGAAATGCAAATGCTAAGAAACTTAAGCACGAGGACGAGGAGTCGTC  152

Query  64   GTAGCGGATACGACCGTGTAAGAGATGATTCCACATTTAGCTTAATCGGAGCAAAGCTAA  123
            |  ||||||| || |||||||| ||||||||||| || ||| || | |||||||||||||
Sbjct  153  GCGGCGGATATGAGCGTGTAAGCGATGATTCCACCTTCAGCCTACTTGGAGCAAAGCTAA  212

Query  124  GGAGGTCAACTAGCGTTCCGTATTATGCTCCATCAATAAGGCTTGGTGGAGACTTTCCTG  183
            |||||||||| |||||||| || ||||||||||| ||||||||||||||||| |||||||
Sbjct  213  GGAGGTCAACGAGCGTTCCATACTATGCTCCATCGATAAGGCTTGGTGGAGATTTTCCTG  272

Query  184  CGATTTTGGAAAAGCTTCCACGCCAAAAACCAACTAAGACAGTGGTGACAAGCAAATTGA  243
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  273  TGATTTTGGAAAAGCTTCCACGCCAAAAACCAACTAAAACAGTGGTGACAAGCAAATTAA  332

Query  244  GCCATCCAATCTTCAGTTTATTTGATGGTTATCGCCGCCGTAGCAAGAAGAAAGCGACGG  303
            ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct  333  GCCATCCAATCTTCAGTTTATTTGATGGTTATCGCCGCCATAACAAGAAGAAAGCGACGG  392

Query  304  CTAAACCGGAGTTCTCTAGGTACCATGAATACCTTAAAGAAAGTGGAATGTGGGATTTGA  363
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  393  CTAAACCGGAGTTCTCTAGATACCATGAATACCTTAAAGAAAGTGGAATGTGGGATTTGA  452

Query  364  GATCTAATACTCCGGTCATCTACTTTAAGTAGATGTATATA  404
            ||||||||| |||||||||||||||||||||||||||||||
Sbjct  453  GATCTAATAGTCCGGTCATCTACTTTAAGTAGATGTATATA  493


> AT2G18200.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT2G18210.1); Has 19 Blast 
hits to 19 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr2:7924267-7924659 
REVERSE LENGTH=393
Length=393

 Score =  292 bits (158),  Expect = 1e-78
 Identities = 216/243 (89%), Gaps = 8/243 (3%)
 Strand=Plus/Plus

Query  20   AATGCAAATGCTAAGAACCCTAAGCACGAGGACAAGGAGCCGTCGTAGCGGATACGACCG  79
            ||||||| ||||||||||||||| ||| || |||||||||||||| || ||||||||  |
Sbjct  87   AATGCAATTGCTAAGAACCCTAACCACAAGAACAAGGAGCCGTCGCAGTGGATACGAGTG  146

Query  80   TGTAAGAGATG-ATTCC-ACATTTAGCTTAATCGGAGCAAAGCTAAGGAGGTCAACTAGC  137
            |||||   | | ||||| || ||||||||| ||||||||||||||||||| || || | |
Sbjct  147  TGTAA-CCAAGCATTCCAAC-TTTAGCTTACTCGGAGCAAAGCTAAGGAGCTC-ACGACC  203

Query  138  GTTCCGTATTATGCTCC--ATCAATAAGGCTTGGTGGAGACTTTCCTGCGATTTTGGAAA  195
            ||||| || ||||||||  ||| || ||||||||||||||||||||||||||||||||||
Sbjct  204  GTTCCTTACTATGCTCCATATCGAT-AGGCTTGGTGGAGACTTTCCTGCGATTTTGGAAA  262

Query  196  AGCTTCCACGCCAAAAACCAACTAAGACAGTGGTGACAAGCAAATTGAGCCATCCAATCT  255
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  263  AGCTTCCACGCCAAAAACCAAATAAGACAGTGGTGACAAGCAAATTGAGCCATCCAATCT  322

Query  256  TCA  258
            |||
Sbjct  323  TCA  325



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19654689859


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5