BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931722
Length=620
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18290.1 | Symbols: APC10 | anaphase promoting complex 10 | ... 1038 0.0
> AT2G18290.1 | Symbols: APC10 | anaphase promoting complex 10
| chr2:7948306-7950329 REVERSE LENGTH=1028
Length=1028
Score = 1038 bits (562), Expect = 0.0
Identities = 599/617 (97%), Gaps = 2/617 (0%)
Strand=Plus/Plus
Query 5 ATCTCGGAGAGGAGATATGGCGACAGAGTCATCGGAATCGGAAGAAGAAGGAAAGATTAG 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 ATCTCGGAGAAGAGATATGGCGACAGAGTCATCGGAATCGGAAGAAGAAGGAAAGATTAG 277
Query 65 AGGAGGAAACGATAAGCTAATCATAGACGACGATCTAAGAGAGATGGGTAAAAACGCAGC 124
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 TGGAGGAAACTATAAGCTAATCATAGACGACGATCTAAGAGAGATGGGTAAAAACGCAGC 337
Query 125 TTGGAGTGTGAGCTCTTGTAAGCCCGGCAATGGCGTCACCACTCTCCGCGACGACAATCT 184
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TTGGAGCGTTAGCTCTTGTAAGCCCGGCAATGGCGTCACCACTCTCCGCGACGACAATCT 397
Query 185 CGAGACTTATTGGCAATCAGATGGGTTACAACCACATTTGATTAACATTCAATTCCAGAA 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 CGAGACTTATTGGCAATCAGATGGGTTACAACCACATTTGATTAACATTCAATTCCAGAA 457
Query 245 GAAAGTGAAATTGCAGTTAGTGGTTCTCTACGTTGACTTTAAGCTTGATGAGAGCTATAC 304
|||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 458 GAAAGTGAAACTGCAGTTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATAC 517
Query 305 ACCAAGTAAAATCTCTATTCGAGCTGGTGATGGTTTTCATAACTTAAAGGAGATTAAAAG 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 ACCAAGTAAAATCTCTATTCGAGCTGGTGATGGTTTTCATAACTTAAAGGAGATTAAAAG 577
Query 365 TGTGGAGCTTGTTAAACCAACTGGTTGGGTTTGCTTATCTCTGTCTGGAACTGATCCACG 424
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 578 TGTGGAGCTTGTTAAACCAACTGGTTGGGTTTGCTTATCTTTGTCTGGAACCGATCCACG 637
Query 425 GGAAACTTTTGTCAATACATTTATGTTACAAATAGCCATTTTGTCGAATCACCTCAACGG 484
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 638 GGAAACTTTTGTCAATACATTTATGTTACAAATAGCCATTTTGTCAAATCACCTCAACGG 697
Query 485 GAGAGATACTCATATCCGCCAGATCAAAGTTTATGGCCCTAGACCAAATCCTATTCCGCA 544
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 698 GAGAGATACTCATATCCGCCAGATCAAAGTTTACGGCCCTAGACCAAATCCTATTCCGCA 757
Query 545 CCAACCGTTTCAGTTTACATCAATGGAGTTTCTCACTTATTCGACGCTGAGATGA-AAGA 603
|||||| |||||||||||||| |||||||||||||||||||| || ||||||||| || |
Sbjct 758 CCAACCTTTTCAGTTTACATCGATGGAGTTTCTCACTTATTCAACACTGAGATGAGAA-A 816
Query 604 TTTGAGCAGGAGAAGTT 620
|||||||||||||||||
Sbjct 817 TTTGAGCAGGAGAAGTT 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29889317465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5