BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931728
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18350.1 | Symbols: AtHB24, HB24, ZHD6 | homeobox protein 24... 1227 0.0
> AT2G18350.1 | Symbols: AtHB24, HB24, ZHD6 | homeobox protein
24 | chr2:7971017-7972081 REVERSE LENGTH=1065
Length=1065
Score = 1227 bits (664), Expect = 0.0
Identities = 777/831 (94%), Gaps = 9/831 (1%)
Strand=Plus/Plus
Query 1 AAGCTTCaagatcagaagaa-atggaagttagagagaagaaagatgagaaaatggagata 59
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 152 AAGCTTCAAGATCAGAA-AAGATGGAAGTTAGAGAGAAGAAAGATGAGAAAATGGAGATG 210
Query 60 acaagaagaCAATCATCAGCTCTAGACCATCGTCTTCTTCCTCCGTACACTTAC-CCTCA 118
||||||||| |||||||||||||||| |||| || ||||||||||||||||||| || ||
Sbjct 211 ACAAGAAGAAAATCATCAGCTCTAGATCATCATCGTCTTCCTCCGTACACTTACTCC-CA 269
Query 119 AACCGCCGACAAAGAGAAACCCACCACCAAAAGAAACGGGTCGGAACCGGATCCGGATCC 178
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 270 AACCGCCAACAAAGAGAAACCCACCACCAAAAGAAACGGGTCGGACCCGGATCCGGATCC 329
Query 179 GGATCTTGATACCAACCCAATTTCTATAGCTCCTGCTCCAAGATCATACGTTAGGCCTCA 238
|||||||||||| ||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 330 GGATCTTGATACTAACCCAATTTCTATATCTCATGCTCCAAGATCATACGCTAGGCCTCA 389
Query 239 AACTACTTCTCCGGGGAAGGCGAGGTATAGAGAATGCCAAAAGAACCACGTGGCGAGCTC 298
||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct 390 AACTACTTCTCCGGGGAAGGCAAGGTATAGAGAATGCCAAAAGAATCACGCGGCGAGCTC 449
Query 299 CGGTGGCCACGTGGTAGACGGTTGCGGCGAGTTTATGCCTTCCGGTGAAGAGGGTACGGC 358
|||||| ||||| || ||||||||||||||||||||| ||||||| ||||| || ||||
Sbjct 450 CGGTGGACACGTTGTCGACGGTTGCGGCGAGTTTATGTCTTCCGGGGAAGAAGGCACGGT 509
Query 359 GGAGTCTCTTATTTGTGCAGCTTGTGATTGTCACCGGAGCTTCCATAGGAAAGAGATCGA 418
|||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 510 GGAGTCTCTTCTTTGTGCAGCTTGTGATTGCCACCGGAGCTTCCATAGAAAAGAGATCGA 569
Query 419 TGGTTTGTTTGTTGTCAATTTCAATAGCTTTGGCCATTCTCAGAGGCCACTCGTTAGCCG 478
||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 570 TGGTTTGTTTGTTGTCAATTTCAATAGCTTTGGCCATTCACAGAGACCACTCGGAAGCCG 629
Query 479 CCACGTGTCTCCGATAATGATGAGCTTCGGTGGCGGTGGT-G--GTGCGGCGGAGTCATC 535
|||||||||||||||||||||||| || ||||| |||||| | ||||||||||||||||
Sbjct 630 CCACGTGTCTCCGATAATGATGAGTTTTGGTGGTGGTGGTGGTTGTGCGGCGGAGTCATC 689
Query 536 GACGGAGGATCTAAACAAATTTCATCAATCTTTTAGTGGTAATGGAGTGGATCAATTTCA 595
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||
Sbjct 690 GACGGAGGATCTAAACAAGTTTCATCAATCTTTTAGTGGTTATGGAGTGGATCAGTTTCA 749
Query 596 TCAGTATCAGCCCAAGAAACGGTTTAGGACAAAGTTCAATGAAGAACAGAAGGAGAAGAT 655
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 750 TCATTATCAACCCAAGAAACGGTTTAGGACAAAGTTTAATGAAGAACAGAAGGAGAAGAT 809
Query 656 GATGGAGTTTGCTGAGAAGATTGGTTGGAGAATAACTAAACAAGAAGACGATGAAGTGAA 715
||||||||||||||||||||||||||||||||| || |||| |||||| |||||||||||
Sbjct 810 GATGGAGTTTGCTGAGAAGATTGGTTGGAGAATGACAAAACTAGAAGATGATGAAGTGAA 869
Query 716 TCGGTTTTGTCGTGAGATTAATGTGAAAAGACAAGTGTTTAAAGTTTGGATGCACAACAA 775
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 870 TCGGTTTTGTCGTGAGATTAAAGTTAAAAGACAAGTGTTTAAAGTTTGGATGCACAACAA 929
Query 776 TAAACAAGCAGCAAAGAAGAAGGATTTGTAAGAGACT-CTATATATACTAT 825
||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 930 TAAACAAGCAGCAAAGAAGAAGGATTTGTAAGAGATTTCTATATATA-TAT 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40237551747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5