BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931733
Length=599
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18390.1 | Symbols: TTN5, HAL, ARL2, ATARLC1 | ADP-ribosylat... 963 0.0
> AT2G18390.1 | Symbols: TTN5, HAL, ARL2, ATARLC1 | ADP-ribosylation
factor family protein | chr2:7988165-7989525 FORWARD LENGTH=879
Length=879
Score = 963 bits (521), Expect = 0.0
Identities = 570/594 (96%), Gaps = 1/594 (0%)
Strand=Plus/Plus
Query 1 GAAGCTCTGTTGTGTG-GAAAATGGGACTGTTAAGCATAATCCGGAAGATCAAGAAGAAA 59
|||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 GAAGCTCTCTTGTATGAAAAAATGGGACTGTTAAGCATAATCCGGAAGATCAAGAAGAAA 209
Query 60 GAGAAGGAGATGCGAATTCTTATGGTTGGACTTGATAATTCTGGGAAGACGACGATTGTT 119
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 GAGAAGGAGATGCGTATTCTTATGGTTGGACTTGATAATTCTGGGAAGACGACGATTGTT 269
Query 120 CTGAAGATAAACGGAGAAGACACAAGTGTGATTAGTCCAACACTTGGATTCAACATCAAA 179
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 270 CTGAAAATAAACGGAGAAGACACAAGTGTGATTAGTCCAACTCTTGGATTCAACATCAAA 329
Query 180 ACCATTGTTTACCAAAAGTATACGCTAAATATATGGGATGTTGGTGGGCAAAAGACTATA 239
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 ACCATTATCTACCAAAAGTATACGCTAAATATATGGGATGTTGGTGGGCAAAAGACTATA 389
Query 240 AGATCGTATTGGAGGAATTACTTTGAGCAGACTGATGGTTTGGTTTGGGTGGTTGATAGT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 AGATCGTATTGGAGGAATTACTTTGAGCAGACTGATGGTTTGGTTTGGGTGGTTGATAGT 449
Query 300 TCTGATCTTAGGAGGTTAGATGACTGTAAGATGGAACTTGACAATCTCTTGAAGGAAGAG 359
||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 450 TCTGATCTTAGGAGGTTAGATGATTGCAAGATGGAACTTGACAATCTCTTGAAAGAAGAG 509
Query 360 AGGCTAGCTGGGTCATCTTTGCTGATACTAGCAAATAAACAGGATATTCAAGGTGCACTT 419
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 510 AGGCTAGCTGGTTCATCTTTGCTGATACTAGCAAATAAGCAGGATATTCAAGGTGCACTA 569
Query 420 ACTCCTGAAGAAATTGGCAAAGTGTTAAACTTAGAGTCCATGGATAAAAGCCGGCACTGG 479
|| ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 570 ACACCTGATGAAATTGGCAAGGTGCTAAACTTAGAGTCCATGGATAAAAGCCGGCACTGG 629
Query 480 AAAATCGTGGGTTGCAGCGCATACACAGGTCAAGGTTTGTTGGAAGGATTCGATTGGTTG 539
|| || |||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 630 AAGATAGTGGGTTGCAGCGCATACACGGGTGAAGGTTTGTTGGAAGGATTCGATTGGTTG 689
Query 540 GTTCAAGACATTGCCTCCAGGATTTACATGCTTGACTAATCAACTACTGCATTG 593
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 690 GTTCAAGACATTGCCTCCAGGATTTACATGCTTGACTAATCGACTACTGCATTG 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28834400378
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5