BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931746
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18490.1 | Symbols: | C2H2-like zinc finger protein | chr2:... 878 0.0
AT2G15740.1 | Symbols: | C2H2-like zinc finger protein | chr2:... 638 0.0
AT5G22990.1 | Symbols: | C2H2-like zinc finger protein | chr5:... 132 8e-30
> AT2G18490.1 | Symbols: | C2H2-like zinc finger protein | chr2:8020668-8021423
FORWARD LENGTH=756
Length=756
Score = 878 bits (475), Expect = 0.0
Identities = 658/745 (88%), Gaps = 18/745 (2%)
Strand=Plus/Plus
Query 258 ATGAGGAGAAACATTGATTATGTTTCTGGTACCGATTATTTGCCTATTAAAGATAATCCT 317
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGAGAAACATTGATTATGTTTCCAGTACCGATTATTTGCCTATTAAAGATAATCCT 60
Query 318 CATCTTACTAGAGTTTCTTTCACTCAAACCATCACTAATAGGTATAGTTCTATTGCTCCT 377
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 61 CATCTTACTAGAGTTTCTTTCACTCAAACCATTACTAATAGGTATAGTTCTATTGTTCCT 120
Query 378 GCCAATACACTTGATGCTGTTCAATATGATATTGAACGTGTCAAACGTGCCATGGATTCT 437
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 ACCAATTCACTTGATGCTGTTCAATATGATATTGAACTTGTCAAACGTGCCATGGATTCT 180
Query 438 AAACCCAATATTTGGAATCCTACTTTACATTCTCCAAATTTTCTTGATAAACAATGCCAG 497
||||||||||||||||||||| ||| || ||||||||||||||| |||||||||| ||
Sbjct 181 AAACCCAATATTTGGAATCCTGTTTTTTATCCTCCAAATTTTCTTGGTAAACAATGCGAG 240
Query 498 ATTCTGA-CTCCTGAGCCTCTTAATGTCATTTTCCCGCGCCAAAATTCTGTAGATCGTCA 556
||| | | | ||||||||||| ||||||||||| || | ||||||||||| |||||||||
Sbjct 241 ATTTTAAAC-CCTGAGCCTCTAAATGTCATTTTTCCTCACCAAAATTCTGGAGATCGTCA 299
Query 557 ACATTTAAACTT-TTTCTCCTTGTCATCCAAGCATAACCATGATCAAAATATTTGTC-AT 614
| |||||||| | ||| ||||||||||| ||||||||||||||||||||| ||| || ||
Sbjct 300 ATATTTAAACATGTTT-TCCTTGTCATCAAAGCATAACCATGATCAAAATGTTT-TCCAT 357
Query 615 GAGGGTCGATCTTTGG-AAAAAGTCTCTAAACCAACCACTTTTTCCa---aaaaaaCTAA 670
|| || ||||||| | ||||| || | |||||||||| | | ||| |||||||||
Sbjct 358 GAAGGCCGATCTTCGACAAAAA-TCCCCAAACCAACCA-TGT--CCATTGAAAAAACTAC 413
Query 671 TGATTATATACATTGTGaaaaaaaCGAGAAAATTGACGATGATCAATATGATGGTCGGAC 730
||| |||||| |||||||| |||||||||||| |||||||| ||||||||||||||| |
Sbjct 414 TGAATATATAGATTGTGAAGAAAACGAGAAAAGTGACGATGCTCAATATGATGGTCGAAT 473
Query 731 ACATAGTCTACCGTATGAGAAATACGGTCCATATACATGTCCCAAATGCAACGGTGTATT 790
||||||| |||| ||| ||||||| ||||||||||||||||| || |||||| || ||||
Sbjct 474 ACATAGTTTACCATATAAGAAATATGGTCCATATACATGTCCTAAGTGCAACAGTATATT 533
Query 791 TAATACTTCTCAACAATTTGCTGCACATATGTCATCTCACTACAAGGGCGAGACGAACAA 850
| ||||||||||| |||||||||||||||||||||||||||||||| | || ||||| ||
Sbjct 534 TGATACTTCTCAAAAATTTGCTGCACATATGTCATCTCACTACAAGAGTGAAACGAATAA 593
Query 851 AGAAAGAGATCAAAGATTTCGTGCAAGGAATAAAAGAAAATATCGTAAATTGAATCCTGA 910
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 594 AGAAAGAGCTCAAAGATTTCGTGCAAGAAATAAAAGAAAATATCGTAAATTGAATCTTGA 653
Query 911 AGTGTATGGGGAATCTCAAAAGATCAAACCAGAAGATGGAGTTAATAGAGG-TAGAAGAA 969
||| |||||||| ||||||||||| |||| ||||||||| || ||| | | | |||| |
Sbjct 654 AGTTTATGGGGAGTCTCAAAAGATTAAACAAGAAGATGGGGTCCATA-ATGATGGAAGGA 712
Query 970 GTGACGGCGAAAC-TATTCAAAATC 993
|||||| | |||| ||||||| |||
Sbjct 713 GTGACGAC-AAACCTATTCAACATC 736
> AT2G15740.1 | Symbols: | C2H2-like zinc finger protein | chr2:6856746-6857735
REVERSE LENGTH=990
Length=990
Score = 638 bits (345), Expect = 0.0
Identities = 766/964 (79%), Gaps = 49/964 (5%)
Strand=Plus/Plus
Query 81 TTTTTTC-CCATCGAAATGAATCACAACTC-CAAGATGGTTCGA-TCGATGTTCACTGCA 137
||||| | ||||| |||||||||| || || ||| ||||||| | |||| ||||| | |
Sbjct 54 TTTTTCCTCCATCCAAATGAATCAAAATTCTCAA-ATGGTTC-ATTCGAGGTTCATTACT 111
Query 138 TATGATTGTTCGAACCATAGTGATTTGTTTTCGTCTTCTCCTTCTATTTCTTGTTACCAA 197
| ||| | |||||| ||||| ||||||| || ||||||||| ||||||||| ||
Sbjct 112 TCGGATCACACAAACCATGGTGATCTGTTTTCATCATCTCCTTCTTTTTCTTGTTTTCAT 171
Query 198 AATTCACATGTCTCTTCATCTTCCTTTGGATT-TAACAATTCACATATGCCCAACCATAT 256
|||||||||| |||||||||||| |||||||| || ||||||||| || || |||||
Sbjct 172 AATTCACATGCCTCTTCATCTTCATTTGGATTCCAA-AATTCACATGTGGAAAATCATAT 230
Query 257 GATGAGGAGAAACATTGATTATGTTTCTGGT-ACCGATTATTTGCCTATTA-AAGATAAT 314
||||| |||||||| | | | |||||| | | | ||||||| |||| | || | |||
Sbjct 231 GATGAAGAGAAACA-T-A--A--TTTCTGATGA-CAATTATTTTTCTATCACAA-ACAAT 282
Query 315 CCTCATCTTACTAGAGTTTCTTTCACTCAAACCATCACTAATAGGTATAGTTCTATTGCT 374
|||||| ||||| ||||||||||||| |||||||| || || | | || | |||| |
Sbjct 283 CCTCATTTTACTCGAGTTTCTTTCACACAAACCATTACAAACAAATTTACAGCCATTGTT 342
Query 375 CCTGCCAATACACTTGATGCTGTTCAATATGATATTGAACGTGTCAAACGTGCCATGGAT 434
||| | ||||||||||| ||||| ||||||||| | |||||||||||||||||||| ||
Sbjct 343 CCTACTAATACACTTGACGCTGTACAATATGATGCTCAACGTGTCAAACGTGCCATGAAT 402
Query 435 TCTAAACCCAATATTTGGAATCCTA-CTTTACATTCTCCAAAT-TTTCTTGATAAACAAT 492
| ||| |||||||||||||||||| ||| | | |||||||| || ||||||||||||
Sbjct 403 CCCAAAACCAATATTTGGAATCCTATATTTTC-TCCTCCAAATACTT-TTGATAAACAAT 460
Query 493 GCCAGA-TTCTGACTCCTGAGCCTCTTAATGTCATTTTCCCGCGCCAAAATTCTGTAGAT 551
|| | | || ||| |||| | ||||||||||||||||| ||| | |||||||||| | ||
Sbjct 461 GCGA-ATTTTTGAATCCTAAACCTCTTAATGTCATTTTTCCGAGTCAAAATTCTGCATAT 519
Query 552 CGTCAACATTTAAAC-TTTTTCTCCTTGTCATCCAAGCATAACCATGATCAAAATATTTG 610
| |||||||||| || | ||| ||||||||||| ||||| || ||||||||| | ||
Sbjct 520 CCTCAACATTTAGACATGTTT-TCCTTGTCATCAAAGCACAATCATGATCAACGT-GTTC 577
Query 611 T-CATGAGGGTCGATCTTTGGAA-AAAGTCTCT-AAACCAACCACT-TTTTCCaaaaaaa 666
| || || ||||| ||| | ||| ||| ||| | |||||||||| | |||| || ||
Sbjct 578 TCCAAGATGGTCGTTCTAT-GAAGAAAATCT-TGAAACCAACCA-TATTTTTTGAAGCAA 634
Query 667 CTAATGATTATATACATTGTGaaaaaaaCGAGAAAATTGACGATGATCA-ATATGATGGT 725
||| |||||| || | | | || |||||||||||| | || ||||||| | ||||||||
Sbjct 635 CTACTGATTACATTGAGTCTCAAGAAAACGAGAAAAGTAACAATGATCACA-ATGATGGT 693
Query 726 CGGACACATAGTCTACCGTATGAGAAATACGGTCCATATACATGTCCCAAATGCAACGGT 785
|||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 694 AGGACACATAGTCTACCATATGAAAAATATGGTCCATATACATGTCCCAAGTGCAATGGC 753
Query 786 GTATTTAATACTTCTCAACAATTTGCTGCACATATGTCATCTCACTACAAGGGCGAGACG 845
|| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 754 GTCTTTAATACTTCTCAAAAATTTGCTGCACATATGTCATCTCACTACAAGAATGAAAC- 812
Query 846 AA-CAAAGAAAGAGATCAAAGATTTCGTGCAAGGAATAAAAGAAAATATCGTAAATTGAA 904
|| | |||||||||| || ||| ||||||||| ||| |||||||||| | ||||| | ||
Sbjct 813 AAGCGAAGAAAGAGAACAGAGAATTCGTGCAAAGAACAAAAGAAAATTTTGTAAACTAAA 872
Query 905 TCCTGAAGTGTA-TGGGGAATCTCAAAAGATCAAACCAGAAGATG-GAGTTAATAG-AGG 961
|| |||| | || ||| || ||||||||| ||||| ||| |||| | | || | ||
Sbjct 873 TCGTGAAAT-TAATGGTGAGCCTCAAAAGACCAAACAAGAGGATGTG-GCCAACAACAG- 929
Query 962 TAGAAGAA-GTGACGGCGAAACTATTCAAA-ATCTTG-GGATCGTAAAAGAAGAGATTGT 1018
| ||| || |||||| ||||| ||| || |||||| || |||||||||||||| ||||
Sbjct 930 T-GAAAAAAGTGACGATAAAACT-TTCCAACATCTTGTGG-TCGTAAAAGAAGAGCTTGT 986
Query 1019 TTAG 1022
||||
Sbjct 987 TTAG 990
> AT5G22990.1 | Symbols: | C2H2-like zinc finger protein | chr5:7691494-7692468
REVERSE LENGTH=975
Length=975
Score = 132 bits (71), Expect = 8e-30
Identities = 109/126 (87%), Gaps = 7/126 (6%)
Strand=Plus/Plus
Query 715 AATATGATGGTCGGACACATAGTC-TACCGTATGAGAAATACGGTCCATATACATGTCCC 773
|||| ||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 689 AATACGATGGTCGGACGCATAG-CTTACCATATGAGAAATACGGTCCATATACATGTCCC 747
Query 774 AAATGCAACGGTGTATTTAATACTTCTCAACAA-TTTGCTGCACATATGTCATC--T-CA 829
||||| ||| |||| ||| | ||||| ||| || |||||||||||||| ||||| | ||
Sbjct 748 AAATGTAACAGTGTGTTTGACACTTCACAA-AAGTTTGCTGCACATATATCATCGATGCA 806
Query 830 CTACAA 835
||||||
Sbjct 807 CTACAA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5