BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931747

Length=700
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18490.1 | Symbols:  | C2H2-like zinc finger protein | chr2:...   542    2e-153


> AT2G18490.1 | Symbols:  | C2H2-like zinc finger protein | chr2:8020668-8021423 
FORWARD LENGTH=756
Length=756

 Score =  542 bits (293),  Expect = 2e-153
 Identities = 400/450 (89%), Gaps = 13/450 (3%)
 Strand=Plus/Plus

Query  255  ATGAGAAGAAACATTGATTATGTTTCTGGTACCGATTATTTTCCTATTAAAGATAATCCT  314
            ||||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||
Sbjct  1    ATGAGGAGAAACATTGATTATGTTTCCAGTACCGATTATTTGCCTATTAAAGATAATCCT  60

Query  315  CATCTTACTAGAGTTTCTTTCACTCAAACCATCACTAATAGGTATAGTTCTATTGCTCCT  374
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct  61   CATCTTACTAGAGTTTCTTTCACTCAAACCATTACTAATAGGTATAGTTCTATTGTTCCT  120

Query  375  GCCAATACAGTTGATGCTGTTCAATATGATATTGAACATGTCAAACGTGCCATGGATTCT  434
             ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  121  ACCAATTCACTTGATGCTGTTCAATATGATATTGAACTTGTCAAACGTGCCATGGATTCT  180

Query  435  AAACCCAATATTTGGAATCCTATTTTACATCCTCCAAATTTTCTTGATAAACAATGCCAG  494
            ||||||||||||||||||||| ||||  |||||||||||||||||| |||||||||| ||
Sbjct  181  AAACCCAATATTTGGAATCCTGTTTTTTATCCTCCAAATTTTCTTGGTAAACAATGCGAG  240

Query  495  ATTCTGA-CTCCTGAACCTCTTAATGTCATTTTCCCGCACCAAAATTCTGCAGATCGTCA  553
            ||| | | | ||||| ||||| ||||||||||| || ||||||||||||| |||||||||
Sbjct  241  ATTTTAAAC-CCTGAGCCTCTAAATGTCATTTTTCCTCACCAAAATTCTGGAGATCGTCA  299

Query  554  ACATTTAAACtttttttCCTTGTCATCCAAGCATAACCATGATCAAAATATTTGTC-ATG  612
            | |||||||| | |||||||||||||| ||||||||||||||||||||| ||| || |||
Sbjct  300  ATATTTAAACATGTTTTCCTTGTCATCAAAGCATAACCATGATCAAAATGTTT-TCCATG  358

Query  613  AGAGTCA-ATCTTTGA-AAAAAGTCCCCAAACCAACCAttttt-ttCGAAAAA-CTAATG  668
            | || |  ||||| || ||||| |||||||||||||||| |   || |||||| ||| ||
Sbjct  359  A-AGGCCGATCTTCGACAAAAA-TCCCCAAACCAACCATGTCCATT-GAAAAAACTACTG  415

Query  669  ATTTTATAGATTTTGAA-AAACACGAGAAA  697
            | | |||||||| |||| ||| ||||||||
Sbjct  416  AATATATAGATTGTGAAGAAA-ACGAGAAA  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33908049225


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5