BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931752
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18540.1 | Symbols: | RmlC-like cupins superfamily protein ... 1206 0.0
> AT2G18540.1 | Symbols: | RmlC-like cupins superfamily protein
| chr2:8042382-8045008 REVERSE LENGTH=2124
Length=2124
Score = 1206 bits (653), Expect = 0.0
Identities = 774/834 (93%), Gaps = 2/834 (0%)
Strand=Plus/Plus
Query 656 GGTTCCTGAGGATATTTTGAGGAAGATAAGAGAAGCAACAAAACCTCCGTTGATTGTAAA 715
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 534 GGTTCCTGAGGATATTTTGAGGAAGATAAGAGACGCAACAAAACCTCCGTTGATTGTAAA 593
Query 716 TGCTCTGCCGAGAAACAGAACACAAGGCTCGGGGGAGGATAAGTGGCAATCACAGCTCGT 775
|||||| |||||||||||||||||||||| || |||||||||||||||||||| ||| ||
Sbjct 594 TGCTCTACCGAGAAACAGAACACAAGGCTTGGAGGAGGATAAGTGGCAATCACGGCTTGT 653
Query 776 TAGGCTTTTTGTCAGAGCTGAAGACGTCACTGATCATTTGGCGATGAAACCAATCGTTGA 835
|||||| |||||||| | ||||||||| |||||||| |||| |||||||||||||||||
Sbjct 654 TAGGCTCTTTGTCAGTGTTGAAGACGTGACTGATCACCTGGCTATGAAACCAATCGTTGA 713
Query 836 TACTAATAAAAAGAAATCAAGAACGTTCAATGTTTTTGAGGAAGACCCGGACTTTGAGAA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TACTAATAAAAAGAAATCAAGAACGTTCAATGTTTTTGAGGAAGACCCGGACTTTGAGAA 773
Query 896 CATCAATGGTCGGAGCATAGTGGTAGACGAGAAGGATTTGGATGCTTTAAAGGGTTCAAG 955
|| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CAACAACGGGCGGAGCATAGTGGTAGACGAGAAGGATTTGGATGCTTTAAAGGGTTCAAG 833
Query 956 ATTTGGGGTTTTTATGGTTAATCTGACTAAGGGATCGATGATGGGACCGCATTGGAACCC 1015
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 834 ATTTGGGGTTTTTATGGTTAATCTAACTAAGGGATCGATGATAGGACCACATTGGAACCC 893
Query 1016 TAGTGCTTGTGAGATATCGATTGTGTTACAAGGGGAAGGCATGATTCGGGTGGTTAACCA 1075
||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 894 TAGTGCTTGCGAGATATCGATTGTGTTAGAAGGGGAAGGCATGGTTCGGGTGGTTAACCA 953
Query 1076 ACAGTCGTTGTCTTCTTGCAAGAACAATAGCAAGAGCGAGAGCTTTATGGTTGAGGAAGG 1135
||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||||||
Sbjct 954 ACAGTCGTTGTCTTCTTGCAAAAACGATAGGAAGAGCGAGAGCTTCATGGTTGAGGAAGG 1013
Query 1136 AGATGTTTTTGTTGTGCCGAAGTTTCATCCTATGGCTCAGATGTCTTTCGAAAACAGTTC 1195
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1014 AGATGTTTTTGTTGTGCCGAAGTTTCATCCGATGGCTCAAATGTCTTTCGAAAACAGTTC 1073
Query 1196 TTTTGTATTTATGGGGTATAGCACTTCCTCAAAGACGAACCACCCTCAGTTTTTAGTAGG 1255
|||||||||||||||| |||||| || | ||||| |||||||||||||| ||||||||
Sbjct 1074 ATTTGTATTTATGGGGTTTAGCACATCGGCGAAGACAAACCACCCTCAGTTCTTAGTAGG 1133
Query 1256 TCAGAGCTCGGTTCTGAAAGTATTGGACCCGGAAGTACTTGCTGTGTCTTTCAACTTAAG 1315
|| ||||| ||| | ||||||||||||| ||| ||| ||||||||||||||||||| ||
Sbjct 1134 GCAAAGCTCAGTTTTAAAAGTATTGGACCGGGACGTAGTTGCTGTGTCTTTCAACTTGAG 1193
Query 1316 TAACGAGACAATTAAGGAATTGTTGAAAGCTCAAAAAGAAAGTGTGATATTTGAGTGTGC 1375
||| ||||| || |||| | | ||||||||||| ||||||||||||||||||||||||||
Sbjct 1194 TAATGAGACTATCAAGGGACTCTTGAAAGCTCAGAAAGAAAGTGTGATATTTGAGTGTGC 1253
Query 1376 GTCATGTGCGGAGGGAGAG-TTTGCAAAGCGTATGAGGGAGATTGCAGAGAGGAAGAGAC 1434
||||||||||||||| ||| ||| |||||| |||||||||||||| ||||||||||||||
Sbjct 1254 GTCATGTGCGGAGGGGGAGCTTT-CAAAGCTTATGAGGGAGATTGAAGAGAGGAAGAGAC 1312
Query 1435 GTGAGGAGGAAGAAATTGAGCGAAAACGGGAATAAGAGGAGGAAGCAAGGAAAA 1488
|||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 1313 GTGAGGAGGAAGAAATTGAGCGAAGACGGAAAGAAGAGGAGGAAGCAAGGAAAA 1366
Score = 712 bits (385), Expect = 0.0
Identities = 492/542 (91%), Gaps = 13/542 (2%)
Strand=Plus/Plus
Query 23 GAGATTTAAGATACTACCATTGTTCATTTTCCTCTCTCTTGTTACCTTGTTCATCTGCAC 82
|||||||| |||||||||| ||| ||||||||||| | |||||| ||||||| |||||||
Sbjct 6 GAGATTTAGGATACTACCACTGTCCATTTTCCTCTGTTTTGTTAGCTTGTTCTTCTGCAC 65
Query 83 AGATTCGTTTT-CGGACCAAAATGGCGTTGTTCCGAGCTCTGATTCGTCGTTTTCATCGC 141
||| || |||| || ||||||||||||| |||||||||| ||| |||||| ||| || |
Sbjct 66 AGAGTC-TTTTACGCACCAAAATGGCGTCGTTCCGAGCTTTGACCCGTCGTATTCGTCTC 124
Query 142 CACTTCTGGTCAAGAAGGACCAACGCACGCCAATCGTCGCGACGGAGTATGGAGAA-ATA 200
||||||||||||||||||| ||||||||| || ||||||||||||||| |||| || |||
Sbjct 125 CACTTCTGGTCAAGAAGGATCAACGCACGTCAGTCGTCGCGACGGAGTTTGGA-AATATA 183
Query 201 TCAGCCGTCCAGATCGGTGATGGGTATCATCTTCAGTTCATAACATTGGAGCCAAACGCA 260
|||||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 184 TCAGCCGTTCAGATCGGTGATGGATACCATATTCAGTTCATAACATTGGAGCCAAACGCA 243
Query 261 CTCTTGCTTCCTCTTCTTCTCCATTCCGACATGGTTTTCTTTGTTCACACTGGGAGTGGG 320
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 244 CTTTTGCTTCCACTTCTTCTCCATTCCGACATGGTTTTCTTTGTTCACACTGGGACTGGG 303
Query 321 ATTCTGAATTGGATCGACGAGGAGAGCGAGAGGACGTTGGAATTAAGACGAGGAGATGTT 380
||||||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||||
Sbjct 304 ATTCTGAATTGGATCGATGAGGAGAGCGAGAGGAAGTTAGAATTAAGACGGGGAGATGTT 363
Query 381 TACAGGCTACGTTCCGGTACAGTCTTCTATGTACATAGCAACGAAGATTCAGAGAAACTT 440
| |||||||||||||||||||||||||||||||||||||||||| || | | |||
Sbjct 364 TTCAGGCTACGTTCCGGTACAGTCTTCTATGTACATAGCAACGA-GA---A-A----CTT 414
Query 441 AGGGTTTACGCAATCTTCGATGTGGGGAAGTGTTTAAACGATCCGTGTCTTGGAGCCTAC 500
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 415 AGGGTTTACGCAATCTTTAATGTGGGGAAGTGTTTAAACGATCCATGTCTTGGAGCCTAC 474
Query 501 TCGAGTGTTAGAGACATTTTATTGGGCTTCGACGATAGAACTCTCCGGTCAGCTTTTGCG 560
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 475 TCGAGTGTTAGAGACCTTTTATTGGGTTTCGACGATAGAACTCTCCGGTCAGCTTTTGCG 534
Query 561 GT 562
||
Sbjct 535 GT 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73443397335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5