BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931758
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18590.1 | Symbols: | Major facilitator superfamily protein... 1354 0.0
> AT2G18590.1 | Symbols: | Major facilitator superfamily protein
| chr2:8069945-8072866 FORWARD LENGTH=1465
Length=1465
Score = 1354 bits (733), Expect = 0.0
Identities = 1198/1419 (84%), Gaps = 45/1419 (3%)
Strand=Plus/Plus
Query 33 TATGGAATCTCCATTTCTCTCATCCTCGTCAACTTAGCCACGATGATGCAACGAGCAGAC 92
||||||||||| ||||||||||| || |||||||||| || |||||||||||||||||
Sbjct 68 TATGGAATCTCTATTTCTCTCATTATCATCAACTTAGCGACTATGATGCAACGAGCAGAT 127
Query 93 GAAAAACTCATTCCTTCGGTTGCCAAAGAAGTGAAAGAAACATTCAATGCAACCCTCTCT 152
||||||||||||||||| |||||||||| |||||||| | ||| |||||| || ||
Sbjct 128 GAAAAACTCATTCCTTCAACTGCCAAAGAATTGAAAGAAGCGTTCCATGCAAAGCTGTCC 187
Query 153 GATATTGGA-TACCTCACATTTATAAGAAATATTGTTCAAGGACTTGCCTCTCCTTTAGC 211
||||||||| | ||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 188 GATATTGGACT-CCTTTCGTTTATAAGAAATATTGTTCAAGGACTTGCCTCGCCTTTAGC 246
Query 212 CGGTTTATTTGTCATCAGTTATGACCG-CCCAACAGTTTTCGCAATCGGTAGTTTCTGTT 270
||||||||||| |||||||||||| || ||| |||||||| || |||| ||||||| ||
Sbjct 247 CGGTTTATTTGCCATCAGTTATGATCGTCCC-ACAGTTTTTGCGTTCGGAAGTTTCTTTT 305
Query 271 GGGTCTTATCAACTTTTGCAGCTGGAGCT-AGCCACTACTTCATTCAGGTTACCCTTGGT 329
|||||| ||||||| ||||| |||||| | |||| ||||||||| |||||||||||||||
Sbjct 306 GGGTCTCATCAACTGTTGCAACTGGAG-TCAGCCGCTACTTCATCCAGGTTACCCTTGGT 364
Query 330 GTGGCACTCAATGGGTTTGGACATGCGATTGTTTACCCAGTGCTTCAGTCGATAATTGCG 389
|| ||| |||||||| |||||||||| |||||||| || ||||||||||||||||| |||
Sbjct 365 GTAGCATTCAATGGGGTTGGACATGCAATTGTTTATCCGGTGCTTCAGTCGATAATCGCG 424
Query 390 GATAGCTTT-AGTGATAGTTCGAGAGGTTTTGGTTTTGGTTTATGGGGTCTCATTGGTAC 448
||||||||| || || |||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 425 GATAGCTTTAAG-GAGAGTTCGAGAGGTTTTGGTTTTGGTTTATGGAATCTGATTGGTAC 483
Query 449 GGTTGGAGGTATAGGGGGAACCGTCGTGCCAACAATCATGGCTGGTCATGATTTCTTGGG 508
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 484 GGTTGGAGGTATAGGCGGAACCGTCGTGCCAACGGTCATGGCTGGTCATGATTTCTTTGG 543
Query 509 GACCCCAGGATGGCGATGCGCCTTTATATTGATG-GCAACGATGAGTGCGATCATCGGGG 567
| ||||||||||||||||||||||||||| | || ||| ||||| |||| |||||
Sbjct 544 AATATCAGGATGGCGATGCGCCTTTATATTGA-GTGCCACGCTGAGTACGATTGTCGGGA 602
Query 568 TTCTTGtttttttCTTTGTCACTGACCCGCG-GACAAAGAAAAGTAGCAGCTTCATT-TC 625
| || ||||| |||||||||| ||||||| | || |||||| | ||||||| ||||| |
Sbjct 603 TCCTCGTTTTCTTCTTTGTCAGTGACCCGAGAGA-AAAGAAGACTAGCAGCGTCATTGT- 660
Query 626 TCATGATC-ATGAACGAGATGAACTAATGGTTCATAAAGCAA-AGAACTATGATGCTTCA 683
|||| | | |||| | | |||||| | | | | ||| ||| | || ||| |
Sbjct 661 TCATCA-CGATGATCAACATGAAC-GA--GATGA-AAA-CAATGGTGGTACAATG-ATGG 713
Query 684 ACAATTATGAG--C-TCGGTTTGGATGGAATCGTGGGTGGCCATAAAAGATGTAACCAAA 740
| | | ||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 714 A-GAGTCCGAGCTCTTCGGTTTGGAAGGAATCGTGGGTGGCCATAAAAGATGTAACCAAG 772
Query 741 TTACGAACATTTCAGGTCATCGTAGTGCAAGGAATCGTGGGTTCGGTGCCATGGACTGCA 800
||| |||| |||||| |||||||| ||||||||||||||||||||||||| |||| ||||
Sbjct 773 TTAAGAACGTTTCAGATCATCGTATTGCAAGGAATCGTGGGTTCGGTGCCGTGGAATGCA 832
Query 801 ATGATTTTCTTCACAATGTGGTTCGAACTTATTGGTATGCGTTTTGATCACAATAAGACG 860
||| |||||| ||||||||||||||||| | | || |||||||||| ||| || ||
Sbjct 833 ATGCTTTTCTGGACAATGTGGTTCGAACTCA----T-TG-GTTTTGATCATAATCAGGCG 886
Query 861 GCAGCT-CTAAACGGCGTATTCACCACTGGACATGCAATAGGAT-ATTTAGTCGGAGGAA 918
|| || || || || |||| |||| ||||| |||||||||| | || ||||||||||
Sbjct 887 GC-TCTCCTCAATGGAATATTTGCCACCGGACAAGCAATAGGATCA-TTGGTCGGAGGAA 944
Query 919 TAGTCGCAGACAAAATGTCTCGTATATTCCCAAACTCAGGCAGAATAATGTGTGCACAAT 978
|| | || || |||||||||||| | || |||||||| |||||| | || || |||||||
Sbjct 945 TAATTGCGGATAAAATGTCTCGTGTGTTTCCAAACTCGGGCAGATTGATTTGCGCACAAT 1004
Query 979 TCAGCGTTTTCATGGGCGCTATATTCTCCATTATTCTTTTAAGAATGATCCCACAGTCCA 1038
|||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1005 TCAGCGTTTTCATGGGAGCTATGTTCTCCATTGTTCTTTTAAGAATGATCCCACAGTCCG 1064
Query 1039 TTGACAGTTACTACATCTTCTTGGTCACTCTTTTTCTAATGGGTCTAACCATAACTTGGT 1098
|| |||||| ||||||||||||||||||||| ||||| ||||| || |||||||||||||
Sbjct 1065 TTAACAGTTTCTACATCTTCTTGGTCACTCTCTTTCTTATGGGGCTGACCATAACTTGGT 1124
Query 1099 GTGGACCAGCCATTAACTTTCCTATCTTAGCTGAGATTGTTCCTCCTAAGCATCGAACCA 1158
|||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1125 GTGGACCAGCCATTAACTCTCCAATCTTAGCTGAGATTGTTCCTGCTAAGCATCGAACCA 1184
Query 1159 TGATCTATGCCTTTGATCGTGCACTCGAAG-GATCTTTGTCGTCATTTGGTGCTCCTTTG 1217
|| ||||||| ||||||||||||||||||| || |||| |||||||||||||| ||||||
Sbjct 1185 TGGTCTATGCATTTGATCGTGCACTCGAAGTGA-CTTTTTCGTCATTTGGTGCGCCTTTG 1243
Query 1218 GTTGGGATTTTGTCGGAGAAAA-TGTTCGGATTTGACTCAAATGGAACTGACT-TTATTA 1275
|||||||| ||||||| |||| | || || |||||| |||| |||| ||| | | |||
Sbjct 1244 GTTGGGATCATGTCGGA-AAAACTTTTTGGGTTTGACGCAAAAGGAATTGA-TCATGTTA 1301
Query 1276 AAGATTCTGGTCGTGCA-GCCGAGGCGTTGTCCAAGGGGATCTTCTCAATGATGGCTGTC 1334
| || |||||||||| | || ||||| || || |||||| | | ||||||||| ||
Sbjct 1302 ACGACTCTGGTCGTG-AGGCTGAGGCACTGGGGAAAGGGATCATGTGGATGATGGCTCTC 1360
Query 1335 CCGTTTGGATTGTGTTGTCTTTGTTACACACCATTATATTTTCTTTTTCAGAAAGATCGA 1394
|||||||||||||||||||||||||||||||| || |||| ||||| | ||||||||||
Sbjct 1361 CCGTTTGGATTGTGTTGTCTTTGTTACACACCGTTGCATTTCCTTTTCCGGAAAGATCGA 1420
Query 1395 AAAATAGCTAGAACTCCGAGTTCAAGGGAAATAGAGATG 1433
||||| | ||||||| | |||||||||||| ||||||||
Sbjct 1421 AAAATCGATAGAACTACTAGTTCAAGGGAAGTAGAGATG 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5